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AT2G05590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TLD-domain containing nucleolar protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT4G39870.2); Has 669 Blast hits to 669 proteins in 148 species: Archae - 0; Bacteria - 0; Metazoa - 372; Fungi - 60; Plants - 112; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5142eggNOG:KOG2372EMBL:AC006220EMBL:CP002685
EnsemblPlants:AT2G05590EnsemblPlants:AT2G05590.1entrez:815108ExpressionAtlas:Q9SL08
GeneID:815108Gramene:AT2G05590.1hmmpanther:PTHR23354hmmpanther:PTHR23354:SF74
InterPro:IPR006571KEGG:ath:AT2G05590Pfam:PF07534PhylomeDB:Q9SL08
PIR:D84470Proteomes:UP000006548RefSeq:NP_565326.1SMART:SM00584
SMR:Q9SL08STRING:3702.AT2G05590.2TAIR:AT2G05590UniGene:At.19034
UniProt:Q9SL08
Coordinates (TAIR10) chr2:+:2067196..2068650
Molecular Weight (calculated) 28959.50 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.28
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MHALKDKVSQ KLSNLFADSP SQSASPRYSN SDSPKARLNS SVGKSLSSYF SFVVPQSGNE EDSELCPPLP IRTESYECIE NCKSANGQAK AGTFISIGED
101: KDCELRVSAK VEESGNDYFD GVKKMRELTE SSVFITANLF EFLHASLPNI VRGCKWILLY STLKHGISLR TLLRRSGELP GPCLLVAGDK QGAVFGALLE
201: CPLQPTPKRK YQGTSQTFLF TTIYGEPRIF RPTGANRYYL MCMNEFLAFG GGGNFALCLD EDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)