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AT1G21760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.954
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : F-box protein 7
Curator
Summary (TAIR10)
This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.
Computational
Description (TAIR10)
F-box protein 7 (FBP7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 471 Blast hits to 471 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 249; Fungi - 132; Plants - 70; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
BioGrid:24019eggNOG:ENOG410XPVIeggNOG:KOG2997EMBL:AC007727
EMBL:AK228033EMBL:BT006427EMBL:CP002684EnsemblPlants:AT1G21760
EnsemblPlants:AT1G21760.1entrez:838780GeneID:838780Genevisible:Q9XI00
GO:GO:0005634GO:GO:0005739GO:GO:0006417GO:GO:0009408
GO:GO:0009409GO:GO:0016567GO:GO:0090406Gramene:AT1G21760.1
hmmpanther:PTHR12874HOGENOM:HOG000012467InParanoid:Q9XI00IntAct:Q9XI00
InterPro:IPR001810KEGG:ath:AT1G21760KO:K10295OMA:HFRASKG
PaxDb:Q9XI00Pfam:PF12937Pfam:Q9XI00Pfscan:PS50181
PhylomeDB:Q9XI00PIR:C86351PRIDE:Q9XI00PRO:PR:Q9XI00
PROSITE:PS50181ProteinModelPortal:Q9XI00Proteomes:UP000006548RefSeq:NP_564150.1
SMART:SM00256SMR:Q9XI00STRING:3702.AT1G21760.1SUPFAM:SSF81383
TAIR:AT1G21760tair10-symbols:ATFBP7tair10-symbols:FBP7UniGene:At.43381
UniGene:At.71064UniGene:At.71563UniPathway:UPA00143UniProt:Q9XI00
Coordinates (TAIR10) chr1:+:7649324..7651613
Molecular Weight (calculated) 38044.80 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.36
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSDALTIPS ELESALRLRT VQYFITKRPW LDLYGVHVRP VPPFGSTSRK PHFDPALIHR CLPDELLFEV FARMMPYDLG RASCVCRKWR YTVRNPMFWR
101: NACLKAWQTA GVIENYKILQ SKYDGSWRKM WLLRSRVRTD GLYVSRNTYI RAGIAEWKIT NPVHIVCYYR YIRFYPSGRF LYKNSSQKLK DVAKYMNFKA
201: SKSENLYKGT YTLSMSDDKI EAAVLYPGTR PTVLRIRLRL RGTAIGANNR MDLLSLVTSG VNDEEISSTE EDILGLVEGW EDDETHNPDI PAVSHKRGMT
301: AFVFVPFEEV DESVLNLPPE KMDYYVTG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)