AT3G47940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.975 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DNAJ heat shock family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT1G10350.1); Has 27840 Blast hits to 26488 proteins in 3397 species: Archae - 203; Bacteria - 10747; Metazoa - 4580; Fungi - 2597; Plants - 2794; Viruses - 15; Other Eukaryotes - 6904 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:17688232..17689402 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39029.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 350 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGVDYYNILK VNHNATEDDL KKAYKRLAMI WHPDKNPSTR RDEAEAKFKR ISEAYDVLSD PQKRQIYDLY GEEGLKSGKI PNSSSSEASS SSSSSSSRYP 101: HFHQHRPQHP PNASSFRFNP RDAEDIYAEF FGSENGGGSN NAGGRGNRAF RNGHFNTGGA NGYSGEMRKV PAMENPLPVS LEDLYKGVVK KMRITRNVYD 201: ASGRMMVEAE ILPIEIKPGW KKGTKLTFPK KGNEEPGIIP ADIVFVVEEK PHPVYKRDGN DLLVSQEITL LEALTGKTVN LITLDGRTLM IPLTEIIKPD 301: HEIVVPNEGM PISKEPGKKG NLKLKLSVKY PSRLTSDQKF ELKRVLGGVS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)