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AT3G61350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SKP1 interacting partner 4
Curator
Summary (TAIR10)
Encodes an SKP1 interacting partner (SKIP4).
Computational
Description (TAIR10)
SKP1 interacting partner 4 (SKIP4); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G55270.1); Has 3566 Blast hits to 2975 proteins in 175 species: Archae - 6; Bacteria - 195; Metazoa - 2199; Fungi - 2; Plants - 1060; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Protein Annotations
BioGrid:10621eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AF263380
EMBL:AK119147EMBL:AL137898EMBL:BT025245EMBL:CP002686
EnsemblPlants:AT3G61350EnsemblPlants:AT3G61350.1entrez:825307Gene3D:2.130.10.80
GeneID:825307Genevisible:Q9M2C9GO:GO:0009409GO:GO:0016567
Gramene:AT3G61350.1hmmpanther:PTHR24414hmmpanther:PTHR24414:SF23HOGENOM:HOG000006150
InParanoid:Q9M2C9InterPro:IPR001810InterPro:IPR006652InterPro:IPR015916
KEGG:ath:AT3G61350OMA:CCYVLDPPaxDb:Q9M2C9Pfam:PF00646
Pfam:PF01344Pfam:Q9M2C9PhylomeDB:Q9M2C9PIR:T47927
PRIDE:Q9M2C9PRO:PR:Q9M2C9ProteinModelPortal:Q9M2C9Proteomes:UP000006548
RefSeq:NP_567112.1SMART:SM00612SMR:Q9M2C9STRING:3702.AT3G61350.1
SUPFAM:0052715SUPFAM:SSF81383TAIR:AT3G61350tair10-symbols:SKIP4
UniGene:At.48794UniGene:At.63627UniPathway:UPA00143UniProt:Q9M2C9
Coordinates (TAIR10) chr3:+:22703203..22704374
Molecular Weight (calculated) 40120.40 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.06
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)