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AT4G29420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 59 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIIFeggNOG:ENOG410YATGEMBL:AK117609EMBL:AL161575
EMBL:BT026133EMBL:CP002687EnsemblPlants:AT4G29420EnsemblPlants:AT4G29420.1
entrez:829063Gene3D:3.80.10.10GeneID:829063Genevisible:Q9M0E1
Gramene:AT4G29420.1HOGENOM:HOG000083063InParanoid:Q9M0E1InterPro:IPR001810
InterPro:IPR032675iPTMnet:Q9M0E1KEGG:ath:AT4G29420OMA:RWQWGTW
PaxDb:Q9M0E1Pfam:PF00646Pfam:Q9M0E1PhylomeDB:Q9M0E1
PIR:C85343PRIDE:Q9M0E1PRO:PR:Q9M0E1ProteinModelPortal:Q9M0E1
Proteomes:UP000006548RefSeq:NP_194671.1SMR:Q9M0E1SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT4G29420UniGene:At.31925UniProt:Q9M0E1
Coordinates (TAIR10) chr4:-:14470715..14472204
Molecular Weight (calculated) 50881.80 Da
IEP (calculated) 7.96
GRAVY (calculated) -0.16
Length 446 amino acids
Sequence (TAIR10)
(BLAST)
001: MDELPPELWI KILSRINDSE SLARCRVASK TLNSLSREVR AVNLICTWSR YLKSRSIVVV TPFKTIFRSL IENSSKIRSI SVGVDKALKG MSFDDFNEED
101: SKDLYLTDVE FVKEWLPRVR EDLENLSISD FWIQSCWRKS DILALISSNC SKLVKLEVKN AWLSVVGLTE MPNLRYLTLE FIRLDDENLE KVNDCFPFLQ
201: ELNLIGVGGL KEPRIHFLHL KSCHWTVSNA PLSLAIVAPN LLELKLKCNK PKSLLVETPK LVQCHLSVED AEGVSFGEFQ DLKTLELVSP DMYRLISNIS
301: FGNKIKKLAV DSVKSIEQSE RLELGLATIL KAFPGITSLS LSPRTWSDIE THFQSQGGLG DMKGTDSLKQ ITARVQMSDH TNVHQTVSFI RSIVNKYRGL
401: TDMRLMIHQD KDPRVRSNLI STCMMSNPRV RWKWGMWAEG GEDMWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)