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AT2G03470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ELM2 domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ELM2 domain-containing protein; FUNCTIONS IN: DNA binding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), ELM2 (InterPro:IPR000949); BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT1G13880.1); Has 3810 Blast hits to 2751 proteins in 251 species: Archae - 13; Bacteria - 211; Metazoa - 978; Fungi - 430; Plants - 279; Viruses - 101; Other Eukaryotes - 1798 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IDYMeggNOG:ENOG410YGXFEMBL:AC006284EMBL:BT002937
EMBL:BT004468EMBL:CP002685EnsemblPlants:AT2G03470EnsemblPlants:AT2G03470.1
entrez:814876ExpressionAtlas:Q9ZQ83GeneID:814876Gramene:AT2G03470.1
hmmpanther:PTHR22970hmmpanther:PTHR22970:SF28HOGENOM:HOG000272663InterPro:IPR000949
KEGG:ath:AT2G03470OMA:NAKHARQPhylomeDB:Q9ZQ83PIR:H84448
Proteomes:UP000006548RefSeq:NP_178446.1SMART:SM01189SMR:Q9ZQ83
TAIR:AT2G03470UniGene:At.41390UniProt:Q9ZQ83
Coordinates (TAIR10) chr2:-:1045694..1047130
Molecular Weight (calculated) 51859.00 Da
IEP (calculated) 4.20
GRAVY (calculated) -0.99
Length 450 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLKRPYDAE EMQKCNAKHA RQLSYKNHNQ FDEAIPYHHA SMEKKTNVLV EDLIGLCENP TWTNDANHVD KGFETTGLCQ EDSQSGVTTQ SDLSHQSSGS
101: DFTWKPVEDV YTCLMNQPPR KQVLVGSNHQ ADIPEFVKEE ILDQSEARTK EDLEGKLMRK CVIPMSDSDL CGTGQGRKEC LCLDKGSIRC VRRHIIEARE
201: SLVETIGYER FMELGLCEMG EEVASLWTEE EEDLFHKVVY SNPFSAGRDF WKQLKGTFPS RTMKELVSYY FNVFILRRRG IQNRFKALDV DSDDDEWQVE
301: YNIFNSTKSL DEEDNNGNRS SYEDNEEEEE TSSNDDDEEE EEEDDSSSND AHCVDTDKAS RDGFGEEVNV EDDSCMSFEL QDSNLIFSHN PIKNRECHRS
401: GEDSYSFDDQ RFTSDCWNKN NDLLPTSNII EEIFGQDDWG DKDDNNLKEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)