AT3G25910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1644) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT3G24740.2); Has 1139 Blast hits to 687 proteins in 95 species: Archae - 0; Bacteria - 20; Metazoa - 459; Fungi - 70; Plants - 423; Viruses - 6; Other Eukaryotes - 161 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9489836..9490954 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42446.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKERKERSV SLDKYKRSPL CCEASLALKP SEKQVKEWEE ARCPVCMEHP HNGILLICSS YENGCRPYMC DTSHRHSNCF DQFRKASKEK PSLSLLREEE 101: ESNEPTEMED VDSDSTAVNL LGEAASEITV VDLSDGERGE EEVEEEEEEV VVEEEEEGIV TTEEDQEKNK PQKLTCPLCR GHIKEWVVVK AARCFMNSKH 201: RSCSCETCDF SGSYSDLRKH ARLLHPGVRP SEADPERQRS WRRLERQSDL GDLLSTLQSS FGGDEISNDD GFLFADTRLL TVYFLIRVFR PESSGSRSSS 301: WSGTSRARTH TSGRRRSSRP ASLWGESYEG NTGTSPRDEE NNQSSDEQVS GTRRRRSRRR TVIDDDDEEE EP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)