AT4G01000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT3G06455.1); Has 9247 Blast hits to 4627 proteins in 669 species: Archae - 0; Bacteria - 50; Metazoa - 4022; Fungi - 1172; Plants - 2220; Viruses - 170; Other Eukaryotes - 1613 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:432186..433727 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45483.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.91 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADQSSKPLQ FFVRLLDGKS LTLSFSSPLA YGEQIKQRIF EQTKIPTHLQ RLISGGYQIS DGSAISQPDA TVNLVLSLRG GKGGFGSLLR GGGMKAGQKK 101: TNNFDACRDM SGRRLRHVNA ENRLQEWKDG EEGRNLEKKA LEYLKKQSNK VKQGVGNGAT QKYVNKYKEE SDKCILAVDL ALNESFKNGK RKAKIGAESE 201: KKKRLKIWKG KRAVEDSDSD DSDDEEDEKS VVLNNGGHDG DSSGKSSCNS GSEEENDAVM HRSFDVVKEE ITGVQGIIEE EMNDLPVSVA VDDANTVADE 301: MDQLEKVEKS SGDAGKNLVD VACETLITSA AVKREGTAKE TVSVDAVCCK PVEPLNFDDF NSPADMEVLG MERLKTELQS RGLKCGGTLR ERAARLFLLK 401: STPLDKLPKK LLAKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)