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AT5G22080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G65280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II51eggNOG:ENOG4110ZJ4EMBL:AK119133EMBL:AL589883
EMBL:CP002688EnsemblPlants:AT5G22080EnsemblPlants:AT5G22080.1entrez:832269
ExpressionAtlas:Q9C580Gene3D:1.10.287.110GeneID:832269Gramene:AT5G22080.1
hmmpanther:PTHR15606hmmpanther:PTHR15606:SF4HOGENOM:HOG000093311InterPro:IPR001623
OMA:KTRNPLAPfam:PF00226Pfscan:PS50076PhylomeDB:Q9C580
PRINTS:PR00625PROSITE:PS50076Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_680194.1SMART:SM00271SMR:Q9C580STRING:3702.AT5G22080.1
SUPFAM:SSF46565TAIR:AT5G22080UniGene:At.45852UniProt:Q9C580
Coordinates (TAIR10) chr5:-:7310600..7313540
Molecular Weight (calculated) 29071.80 Da
IEP (calculated) 10.00
GRAVY (calculated) -1.22
Length 246 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEVKVDDDA ILKSFLAEVG EVERDNEVGR ILSCFKLNPF EHLNLSFDSS TDDVKRQYRK ISLMVHPDKC KHPQAQEAFG ALAKAQQLLL NDQERDYILT
101: QVHAAKEELK MKRKKQLKKD TASKIKSLVD EGKHEHIYEQ SEEFQKELKL KVREILTDQE WRRRKMAMRI SEEEGRLKKD EAEQKEIWKK KREHEEQWEG
201: TREKRVSSWR DFQKAGKKAK KGETRPPKLK TEDPNKSYVQ RPVKKG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)