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AT4G19190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CBF1-interacting co-repressor CIR, N-terminal (InterPro:IPR019339), Zinc finger, CCHC-type (InterPro:IPR001878); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZVMReggNOG:KOG3794EMBL:AK176041EMBL:AK222139
EMBL:AK222181EMBL:AK229939EMBL:AL021687EMBL:AL161550
EMBL:AY065216EMBL:AY133757EMBL:CP002687EnsemblPlants:AT4G19190
EnsemblPlants:AT4G19190.1entrez:827658GeneID:827658GO:GO:0003676
GO:GO:0008270Gramene:AT4G19190.1hmmpanther:PTHR13151HOGENOM:HOG000006359
InterPro:IPR019339iPTMnet:Q8VZ67KEGG:ath:AT4G19190OMA:HQGNSHR
PaxDb:Q8VZ67Pfam:PF10197Pfam:PF15288Pfam:Q8VZ67
PhylomeDB:Q8VZ67PRIDE:Q8VZ67PRO:PR:Q8VZ67ProteinModelPortal:Q8VZ67
Proteomes:UP000006548RefSeq:NP_193654.2SMART:SM01083STRING:3702.AT4G19190.1
TAIR:AT4G19190UniGene:At.28610UniGene:At.74330UniProt:Q8VZ67
Coordinates (TAIR10) chr4:+:10493323..10495969
Molecular Weight (calculated) 69150.60 Da
IEP (calculated) 9.93
GRAVY (calculated) -1.61
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGEGEGSGI RLSKRFAGGK VTGGSLEVDY KTKSGTAWSH SFLNQKPWHP LSYPNQRRKW IAEQTHAQHD RRAEEVAREF AQEQEFFKQA ALISKKEREK
101: IETMKAVSFM YVRPPGYDPE SAKAAEYKDE KHKGQGSSTQ DPVADDNVGS RPEESQGGGE RTQERKKPRP KDVFGRALPT EEEFEVLKNA PRMETGIPGR
201: VKPFAVEVRN VKCLRCGNFG HQSGDRDCPL KDAVMPNEEL RLKRDDPLTA IIAHTDPSEP LKWELKQKPG LSPPRGGFDP DDPNQQIVAE DIFDEYGGFL
301: EGSIPIEILK SMSSDKKRKS KKNKRHKKHS SRTVEETDES STGSEDSREK RGSKKRKKLK KKSKKQYDSD SLSFEGSGSD SYRLSRRRHT KHVDPSASLK
401: SEVYHQGNSH REKHYYDEKH QKRKEIVDRP SASSDDSDYY RSNSSRKKRS EDDYKSHHRE RKQVHSNDPV SEKSQKQHYS ESGKIQRVEK EHRYDERRHR
501: YVDMESENRN RSEKKPRYDD RDSEKHHRSV KGKEKHVYEA SDDPEEFSDR YRSTKKTESD SESNRRSRKK KHELSSEEEE GESRKHRYST NRRRN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)