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AT5G62910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G48070.2); Has 749 Blast hits to 665 proteins in 188 species: Archae - 0; Bacteria - 6; Metazoa - 241; Fungi - 216; Plants - 135; Viruses - 4; Other Eukaryotes - 147 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5175eggNOG:KOG2068EMBL:AB009053EMBL:BT024718
EMBL:CP002688EnsemblPlants:AT5G62910EnsemblPlants:AT5G62910.1entrez:836411
Gene3D:3.30.40.10GeneID:836411GO:GO:0008270Gramene:AT5G62910.1
hmmpanther:PTHR12603hmmpanther:PTHR12603:SF5HOGENOM:HOG000083855InterPro:IPR001841
InterPro:IPR013083KEGG:ath:AT5G62910OMA:FERNENMPfam:PF14570
Pfscan:PS50089PhylomeDB:Q9FM05PRO:PR:Q9FM05PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_201096.1SMR:Q9FM05STRING:3702.AT5G62910.1
SUPFAM:SSF57850TAIR:AT5G62910UniGene:At.29027UniProt:Q9FM05
Coordinates (TAIR10) chr5:+:25250830..25252015
Molecular Weight (calculated) 35986.60 Da
IEP (calculated) 5.78
GRAVY (calculated) -0.80
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MITDSITNAS ATSAPRDSGK KKRNNKSAKM KQNKLGLRRE QWLSQVAVSN KEVKEERSVN RSQKPHHESS DKVRREEDNN GGNNLLHHES FMESPSNSSV
101: GGTYSSTNFS GRSSRSSSSS SGFCSGNITE EENVDDDDDG CVDDWEAVAD ALAAEEEIEK KSRPLESVKE QVSVGQSASN VCDSSISDAS DVVGVEDPKQ
201: ECLRVSSRKQ TSNRAWRLDD DLRPQGLPNL AKQLSFPELD KRFSSVAIPS SCPICYEDLD LTDSNFLPCP CGFRLCLFCH KTICDGDGRC PGCRKPYERN
301: MVKAETSIQG GGLTIRLARS SSMFCKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)