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AT1G09320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : agenet domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1); Has 769 Blast hits to 316 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 3; Plants - 733; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKAEeggNOG:ENOG410YHUEEMBL:BT022112EMBL:CP002684
EnsemblPlants:AT1G09320EnsemblPlants:AT1G09320.1entrez:837453GeneID:837453
Gramene:AT1G09320.1hmmpanther:PTHR31917hmmpanther:PTHR31917:SF16HOGENOM:HOG000136721
InterPro:IPR008395InterPro:IPR014002KEGG:ath:AT1G09320ncoils:Coil
OMA:NCSKNDGPfam:PF05641PhylomeDB:Q500V5Proteomes:UP000006548
RefSeq:NP_172403.3SMART:SM00743SMR:Q500V5STRING:3702.AT1G09320.1
TAIR:AT1G09320UniGene:At.42230UniProt:Q500V5
Coordinates (TAIR10) chr1:-:3010270..3012228
Molecular Weight (calculated) 59715.60 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.72
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRPRRSLGV SSPAKQRKKA APKNSMATRA NRKRLPSYLK PGSAVEISSD EIGFRGSWYM GKVITIPSSS DKDSVKCQVE YTTLFFDKEG TKPLKEVVDM
101: SQLRPPAPPM SEIEKKKKIV VGEEVDAFYN DGWWEGDVTE VLDDGKFSVF FRSSKEQIRF RKDELRFHRE WVDGAWKPPL EETEEEEDES EEDKLDDSED
201: EEDILARVDL ETTRAIAKQM FSSGTVVEVS SDEEGFQGCW FAAKVVEPVG EDKFLVEYRD LREKDGIEPL KEETDFLHIR PPPPRDEDID FAVGDKINAF
301: YNDGWWVGVV IDGMKHGTVG IYFRQSQEKM RFGRQGLRLH KDWVDGTWQL PLKGGKIKRE KTVSCNRNVR PKKATEKQAF SIGTPIEVSP EEEGFEDSWF
401: LAKLIEYRGK DKCLVEYDNL KAEDGKEPLR EEVNVSRIRP LPLESVMVSP FERHDKVNAL YNDGWWVGVI RKVLAKSSYL VLFKNTQELL KFHHSQLRLH
501: QEWIDGKWIT SFKSQKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)