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AT5G55700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.752
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 4
Curator
Summary (TAIR10)
In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.
Computational
Description (TAIR10)
beta-amylase 4 (BAM4); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: chloroplast beta-amylase (TAIR:AT4G17090.1); Has 805 Blast hits to 802 proteins in 156 species: Archae - 0; Bacteria - 86; Metazoa - 0; Fungi - 0; Plants - 654; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1680-MONOMERBioGrid:20908CAZy:GH14eggNOG:ENOG410J8X5
eggNOG:ENOG4111DRREMBL:AB009050EMBL:AK317617EMBL:AY045834
EMBL:BT001909EMBL:CP002688EnsemblPlants:AT5G55700EnsemblPlants:AT5G55700.1
entrez:835664ExpressionAtlas:Q9FM68Gene3D:3.20.20.80GeneID:835664
Genevisible:Q9FM68GO:GO:0005983GO:GO:0009507gramene_pathway:3.2.1.2
gramene_pathway:PWY-842hmmpanther:PTHR31352hmmpanther:PTHR31352:SF9HOGENOM:HOG000238755
InParanoid:Q9FM68InterPro:IPR001371InterPro:IPR001554InterPro:IPR013781
InterPro:IPR017853KEGG:00500+3.2.1.2OMA:NWNNFVPPaxDb:Q9FM68
Pfam:PF01373Pfam:Q9FM68PhylomeDB:Q9FM68PRIDE:Q9FM68
PRINTS:PR00750PRINTS:PR00842PRO:PR:Q9FM68ProteinModelPortal:Q9FM68
Proteomes:UP000006548RefSeq:NP_568829.2SMR:Q9FM68STRING:3702.AT5G55700.1
SUPFAM:SSF51445TAIR:AT5G55700tair10-symbols:BAM4tair10-symbols:BMY6
UniGene:At.49179UniGene:At.71092UniProt:Q9FM68
Coordinates (TAIR10) chr5:+:22551873..22554702
Molecular Weight (calculated) 60120.20 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.27
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MTETGVIGCG CRGVTGGNFF HPGGFSLKSC FLEQSTKRNR NFFRSVSMIP PFKRGRFITK LRSVAGNSRI FSMDAREKSR SFVLVSSRHK RVPVFVMMPI
101: DTFGIDASGC PKIKRLKALT VSLKALKLAG VHGIAVEVWW GIVERFSPLE FKWSLYEELF RLISEAGLKL HVALCFHSNM HLFGGKGGIS LPLWIREIGD
201: VNKDIYYRDK SGFSNNDYLT LGVDQLPLFG GRTAVQCYED FMLSFSTKFE PYLGNVIEEI SIGLGPSGEL RYPAHPSGDG RWKFPGIGEF QCHDKYMMED
301: LMAVASQEGK PQWGSRDPPN TGCYNSFPSG VPFFEEGNDS FLSDYGRFFL EWYSGKLICH ADAILAKAAD VLRRRQEEEK SSVMLVAKIG GIYWWYKTSS
401: HPAELTAGYY NTSLRDGYDP VASVLSRHGA ALNIPCLDMA DSEIPEKYLC SPEGLRRQIH DVSKKWTIHV TGRNTSERFD EMGLRQIREN CVQPNGDTLR
501: SFTFCRMNEK IFRVENWNNF VPFIRQMSAD M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)