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AT1G45976.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-ribonuclease binding protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-ribonuclease binding protein 1 (SBP1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 1148 Blast hits to 1148 proteins in 158 species: Archae - 2; Bacteria - 4; Metazoa - 532; Fungi - 2; Plants - 446; Viruses - 53; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AC083835EMBL:AF324720
EMBL:AF329502EMBL:AF349529EMBL:AK221737EMBL:AY070470
EMBL:AY093744EMBL:CP002684EnsemblPlants:AT1G45976EnsemblPlants:AT1G45976.1
entrez:841106GeneID:841106GO:GO:0004842GO:GO:0005634
GO:GO:0008270GO:GO:0031347Gramene:AT1G45976.1hmmpanther:PTHR10044
hmmpanther:PTHR10044:SF118HOGENOM:HOG000005672InterPro:IPR001841InterPro:IPR017066
KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT1G45976
KO:K19042ncoils:CoilOMA:MPKENRHPfam:PF13920
Pfscan:PS50089PhylomeDB:Q9FEA0PIR:B96511PIRSF:PIRSF036836
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_175141.1SMR:Q9FEA0
STRING:3702.AT1G45976.1TAIR:AT1G45976tair10-symbols:SBP1UniGene:At.16918
unipathway:UPA00144UniProt:Q9FEA0
Coordinates (TAIR10) chr1:+:17199371..17200680
Molecular Weight (calculated) 36860.70 Da
IEP (calculated) 4.97
GRAVY (calculated) -0.65
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)