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AT3G48070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G62910.1); Has 516 Blast hits to 512 proteins in 181 species: Archae - 0; Bacteria - 1; Metazoa - 163; Fungi - 134; Plants - 150; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5175eggNOG:KOG2068EMBL:AK221778EMBL:AL049658
EMBL:AY084934EMBL:BT026115EMBL:CP002686EMBL:DQ059132
EnsemblPlants:AT3G48070EnsemblPlants:AT3G48070.1entrez:823962ExpressionAtlas:Q9SU70
Gene3D:3.30.40.10GeneID:823962GO:GO:0008270Gramene:AT3G48070.1
hmmpanther:PTHR12603hmmpanther:PTHR12603:SF5HOGENOM:HOG000083855InterPro:IPR001841
InterPro:IPR013083Pfam:PF14570Pfscan:PS50089PhylomeDB:Q9SU70
PIR:T06676PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_190390.1
SMR:Q9SU70STRING:3702.AT3G48070.2SUPFAM:SSF57850TAIR:AT3G48070
UniGene:At.23454UniProt:Q9SU70
Coordinates (TAIR10) chr3:+:17750878..17751978
Molecular Weight (calculated) 35235.90 Da
IEP (calculated) 5.50
GRAVY (calculated) -0.83
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MISDSITNAS ATSAPTARDF GKKKRTNRSA KLKQSKLGLR REQWLSQVAM INKGDKEEME SNRRIGSEKP DQRDLPRPVE NLDEDNNGTH RHESFIESLS
101: NSPNSILSGM NSIPNFSSSS SSGSGGSCSG NITEEEDADD DGCLDDWEAI ADALAADDEK HEKENPPESC QEHEDIKQSA LIGGADVVLR DAKADSQRRK
201: QKSNQAWRPD DKLRPQGLPN LEKQRSFPVM NLHFSSVTVV PSSCPICYED LDLTDSNFLP CPCGFRLCLF CHKTICDGDG RCPGCRKPYE RNTIKFEASV
301: QGGGLTIRLA RSSSMFCRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)