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AT5G37930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT1G66650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002EMBL:AB012241
EMBL:BT004120EMBL:BT004967EMBL:CP002688EnsemblPlants:AT5G37930
EnsemblPlants:AT5G37930.1entrez:833772Gene3D:3.30.40.10Gene3D:3.90.890.10
GeneID:833772Genevisible:Q84K34GO:GO:0004842GO:GO:0005634
GO:GO:0006511GO:GO:0007275GO:GO:0008270GO:GO:0016874
Gramene:AT5G37930.1hmmpanther:PTHR10315hmmpanther:PTHR10315:SF43HOGENOM:HOG000154324
InParanoid:Q84K34InterPro:IPR004162InterPro:IPR008974InterPro:IPR013010
InterPro:IPR013083InterPro:IPR013323InterPro:IPR018121KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT5G37930KO:K04506
OMA:NHQSRKRPANTHER:PTHR10315PaxDb:Q84K34Pfam:PF03145
Pfam:Q84K34Pfscan:PS51081PhylomeDB:Q84K34PRIDE:Q84K34
PRO:PR:Q84K34PROSITE:PS51081ProteinModelPortal:Q84K34Proteomes:UP000006548
RefSeq:NP_198609.1SMR:Q84K34STRING:3702.AT5G37930.1SUPFAM:SSF49599
TAIR:AT5G37930UniGene:At.30452UniPathway:UPA00143UniProt:Q84K34
Coordinates (TAIR10) chr5:-:15102239..15103651
Molecular Weight (calculated) 38925.80 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.44
Length 349 amino acids
Sequence (TAIR10)
(BLAST)
001: MARFSVCGGD DGEGPSNNNH QSRKRQRLPS IDENEEDAET SDAGSSGEED EDETQNQGMR PESEDRGSTS DDSDREVVIE ERRFGKFVNS QSSSSSKDSP
101: LSVTLLDPDV LDCPICCEPL KIPIFQCDNG HLACTLCCTK VRNRCPSCTL PIGYVRCRAM EKVIEASRVS CLNAKYGCKE STSYGNRFSH EQVCVFTPCS
201: CPILDCHYTG YYKDLNNHVR AEHKDDLISF VWNTRLTISL DLNKKTTILQ EENDGHVIVV QVFRALHAVY VSVSCIAPLT PGVGRLSCRL AKITVDSLLK
301: QGFMVKNIQK VTNEHPEDGF MLIPSYLFSG NDNLNLQIWI GHGRIFVHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)