AT3G62330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 1256 Blast hits to 1123 proteins in 138 species: Archae - 0; Bacteria - 13; Metazoa - 788; Fungi - 82; Plants - 113; Viruses - 7; Other Eukaryotes - 253 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23063329..23065419 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55964.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.49 | ||||||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESTRSDPEL DDDFSEIYKE YTGPASAVTN NNIQDKDKPV KQRSEERCDE EEEQLPDPNS VPTDFTSREA KVWEAKSKAT ERNWKKRKEE EMICKICGES 101: GHFTQGCPST LGANRKSQEF FERVPARDNN VRVLFTEKVM ESIERETSCK IKLDEKFIIV SGKDRLILRK GVDAVHKVKE DGEMKSSSVS HRSRSRSPRR 201: TSVGPSRARN SEPQRQQLPS HGSSSFPERS GRQDKFVDNR FREETRVREN QRNVPRGSPQ AYGSDRARSR STHSKSPGRP RYSGWDKPYD RQKPEVSGYR 301: SERWDQERMG GSSDIQVSHQ FERPPFPQTL EELELEYTRD ALELEKKRDK EEDEENNKHR ETIRELRESY MKKLAGLRGM NAKQWDDFLQ LDAQRRQQQA 401: RQQNSGLSYG NYRQFPPYAE FDDGYSSNPP PYGGNNMPMD SKGRYPNHGD NYSSRHQDNN YGGFQRQRRE EYGKAYNRY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)