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AT3G22220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hAT transposon superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 845 Blast hits to 775 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 835; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4I0eggNOG:ENOG410XWK2EMBL:AP001306EMBL:BT004077
EMBL:BT005122EMBL:CP002686EnsemblPlants:AT3G22220EnsemblPlants:AT3G22220.1
EnsemblPlants:AT3G22220.2entrez:821786GeneID:821786GO:GO:0003677
GO:GO:0009506Gramene:AT3G22220.1Gramene:AT3G22220.2hmmpanther:PTHR32166
hmmpanther:PTHR32166:SF27HOGENOM:HOG000240522IntAct:Q9LIE1InterPro:IPR003656
InterPro:IPR007021InterPro:IPR008906InterPro:IPR012337KEGG:ath:AT3G22220
OMA:TETINDEPfam:PF02892Pfam:PF04937Pfam:PF05699
Pfscan:PS50808PhylomeDB:Q9LIE1PROSITE:PS50808Proteomes:UP000006548
RefSeq:NP_001030742.1RefSeq:NP_188861.2SUPFAM:SSF53098TAIR:AT3G22220
UniGene:At.23487UniProt:Q9LIE1
Coordinates (TAIR10) chr3:-:7839808..7842358
Molecular Weight (calculated) 86395.00 Da
IEP (calculated) 5.36
GRAVY (calculated) -0.32
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSDLEPVAL TPQKQDSAWK HCEVYKYGDR VQMRCLYCRK MFKGGGITRV KEHLAGKKGQ GTICDQVPDE VRLFLQQCID GTVRRQRKRR KSSPEPLPIA
101: YFPPCEVETQ VAASSDVNNG FKSPSSDVVV GQSTGRTKQR TYRSRKNNAF ERNDLANVEV DRDMDNLIPV AISSVKNIVH PTSKEREKTV HMAMGRFLFD
201: IGADFDAANS VNVQPFIDAI VSGGFGVSIP THEDLRGWIL KSCVEEVKKE IDECKTLWKR TGCSVLVQEL NSNEGPLILK FLVYCPEKVV FLKSVDASEI
301: LDSEDKLYEL LKEVVEEIGD TNVVQVITKC EDHYAAAGKK LMDVYPSLYW VPCAAHCIDK MLEEFGKMDW IREIIEQART VTRIIYNHSG VLNLMRKFTF
401: GNDIVQPVCT SSATNFTTMG RIADLKPYLQ AMVTSSEWND CSYSKEAGGL AMTETINDED FWKALTLANH ITAPILRVLR IVCSERKPAM GYVYAAMYRA
501: KEAIKTNLAH REEYIVYWKI IDRWWLQQPL YAAGFYLNPK FFYSIDEEMR SEIHLAVVDC IEKLVPDVNI QDIVIKDINS YKNAVGIFGR NLAIRARDTM
601: LPAEWWSTYG ESCLNLSRFA IRILSQTCSS SIGSVRNLTS ISQIYESKNS IERQRLNDLV FVQYNMRLRR IGSESSGDDT VDPLSHSNME VLEDWVSRNQ
701: VCIEGNGSSD WKSLEFIKRS EEVAVVIDET EDLGSGFDDA EIFKGEKEAS YEGGYSENLF T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)