AT4G15020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hAT transposon superfamily | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT3G22220.2); Has 879 Blast hits to 805 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 863; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8575806..8578372 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86648.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||
| Length | 768 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAELEPVAL TPQKQDNAWK HCEIYKYGDR LQMRCLYCRK MFKGGGITRV KEHLAGKKGQ GTICDQVPED VRLFLQQCID GTVRRQRKRH KSSSEPLSVA 101: SLPPIEGDMM VVQPDVNDGF KSPGSSDVVV QNESLLSGRT KQRTYRSKKN AFENGSASNN VDLIGRDMDN LIPVAISSVK NIVHPSFRDR ENTIHMAIGR 201: FLFGIGADFD AVNSVNFQPM IDAIASGGFG VSAPTHDDLR GWILKNCVEE MAKEIDECKA MWKRTGCSIL VEELNSDKGF KVLNFLVYCP EKVVFLKSVD 301: ASEVLSSADK LFELLSELVE EVGSTNVVQV ITKCDDYYVD AGKRLMLVYP SLYWVPCAAH CIDQMLEEFG KLGWISETIE QAQAITRFVY NHSGVLNLMW 401: KFTSGNDILL PAFSSSATNF ATLGRIAELK SNLQAMVTSA EWNECSYSEE PSGLVMNALT DEAFWKAVAL VNHLTSPLLR ALRIVCSEKR PAMGYVYAAL 501: YRAKDAIKTH LVNREDYIIY WKIIDRWWEQ QQHIPLLAAG FFLNPKLFYN TNEEIRSELI LSVLDCIERL VPDDKIQDKI IKELTSYKTA GGVFGRNLAI 601: RARDTMLPAE WWSTYGESCL NLSRFAIRIL SQTCSSSVSC RRNQIPVEHI YQSKNSIEQK RLSDLVFVQY NMRLRQLGPG SGDDTLDPLS HNRIDVLKEW 701: VSGDQACVEG NGSADWKSLE SIHRNQVAPI IDDTEDLGSG FDDIEIFKVE KEVRDEGYYT NTSEKLFT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)