AT2G38840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Guanylate-binding family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16227329..16232115 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69174.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.29 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIPRRTFVF FFSLCLLSST SLSIDNFHQA FPIVEPAPGH TKLQLSREGL EAISRITTPI SAVAVIGPYR SGKSFLLNQL LSLSCYEGFG VGHMRDTKTK 101: GIWVWGTPLE LEIDGVKTSV IYLDTEGFES VGKSNVYDDR IFALATVMSS VLIYNLPETI READISRLSF AVELAEEFYG RVKGEDVAFE PSKLLWLIQR 201: DFLQGKSVKQ MVDEALRHVP NEDGNKNIDQ VNQIRDSLAI MGDNSTAFSL PQPHLMRTKL CDLKDEDLDS TYVARRDQLK KLVASIIRPK IVQGKTLNGK 301: EFISFLEQIL DALNKGEIPS TGSLVEVFNK DIVERCVKLY NEKMVRVRLP MSEESLQSAH EMAHNEAIKA FDAQHFGRQH AKKSVDQLDE QMQEVYKNFV 401: LANEYQSSKL CEALYTSCED DMDHLQALRL PSMAKFNAGF VYCNKTFEQQ CVGPSKQNYE QRLTKMMGKS RSLFIKEYNN RLFNWLVGFS LVMVVVGRFI 501: IKFILLEMAA WILFIFLETY TRMFWTAEAL YYNPVWHFIV GTWENVVYSP VLDLDRWAIP IVCIIALCVL YWRCYGKRKH GARWLLPLYN NQKNGRNRER 601: SE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)