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AT2G38840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Guanylate-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Guanylate-binding family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: immune response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Guanylate-binding protein, N-terminal (InterPro:IPR015894), Guanylate-binding protein, C-terminal (InterPro:IPR003191); BEST Arabidopsis thaliana protein match is: Guanylate-binding family protein (TAIR:AT5G46070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR6ZeggNOG:KOG2037EMBL:CP002685EnsemblPlants:AT2G38840
EnsemblPlants:AT2G38840.1entrez:818468Gene3D:3.40.50.300GeneID:818468
GO:GO:0003924GO:GO:0005525GO:GO:0016021Gramene:AT2G38840.1
hmmpanther:PTHR10751hmmpanther:PTHR10751:SF38InParanoid:F4ITY5InterPro:IPR003191
InterPro:IPR015894InterPro:IPR027417InterPro:IPR030386KEGG:ath:AT2G38840
ncoils:CoilOMA:NNQKNGRPaxDb:F4ITY5Pfam:PF02263
Pfam:PF02841Pfscan:PS51715PRIDE:F4ITY5PROSITE:PS51715
ProteinModelPortal:F4ITY5Proteomes:UP000006548RefSeq:NP_181418.3SMR:F4ITY5
SUPFAM:0037397SUPFAM:SSF48340SUPFAM:SSF52540TAIR:AT2G38840
TMHMM:TMhelixUniGene:At.37237UniProt:F4ITY5
Coordinates (TAIR10) chr2:+:16227329..16232115
Molecular Weight (calculated) 69174.70 Da
IEP (calculated) 7.29
GRAVY (calculated) -0.15
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIPRRTFVF FFSLCLLSST SLSIDNFHQA FPIVEPAPGH TKLQLSREGL EAISRITTPI SAVAVIGPYR SGKSFLLNQL LSLSCYEGFG VGHMRDTKTK
101: GIWVWGTPLE LEIDGVKTSV IYLDTEGFES VGKSNVYDDR IFALATVMSS VLIYNLPETI READISRLSF AVELAEEFYG RVKGEDVAFE PSKLLWLIQR
201: DFLQGKSVKQ MVDEALRHVP NEDGNKNIDQ VNQIRDSLAI MGDNSTAFSL PQPHLMRTKL CDLKDEDLDS TYVARRDQLK KLVASIIRPK IVQGKTLNGK
301: EFISFLEQIL DALNKGEIPS TGSLVEVFNK DIVERCVKLY NEKMVRVRLP MSEESLQSAH EMAHNEAIKA FDAQHFGRQH AKKSVDQLDE QMQEVYKNFV
401: LANEYQSSKL CEALYTSCED DMDHLQALRL PSMAKFNAGF VYCNKTFEQQ CVGPSKQNYE QRLTKMMGKS RSLFIKEYNN RLFNWLVGFS LVMVVVGRFI
501: IKFILLEMAA WILFIFLETY TRMFWTAEAL YYNPVWHFIV GTWENVVYSP VLDLDRWAIP IVCIIALCVL YWRCYGKRKH GARWLLPLYN NQKNGRNRER
601: SE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)