suba logo
AT1G21170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exocyst complex component SEC5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SEC5B; BEST Arabidopsis thaliana protein match is: exocyst complex component sec5 (TAIR:AT1G76850.1); Has 822 Blast hits to 808 proteins in 207 species: Archae - 0; Bacteria - 24; Metazoa - 388; Fungi - 169; Plants - 124; Viruses - 8; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
BioGrid:23952eggNOG:ENOG410XSY3eggNOG:KOG2347EMBL:AC012190
EMBL:AC036104EMBL:CP002684EnsemblPlants:AT1G21170EnsemblPlants:AT1G21170.1
entrez:838713GeneID:838713Genevisible:F4HWE6GO:GO:0000145
GO:GO:0001927GO:GO:0005829GO:GO:0006893Gramene:AT1G21170.1
hmmpanther:PTHR13043HOGENOM:HOG000029908InParanoid:F4HWE6InterPro:IPR016159
InterPro:IPR029175iPTMnet:F4HWE6KEGG:ath:AT1G21170KO:K17637
OMA:HENKTKDPANTHER:PTHR13043PaxDb:F4HWE6Pfam:F4HWE6
Pfam:PF15469PIR:A86345PIR:H86344PRIDE:F4HWE6
PRO:PR:F4HWE6ProteinModelPortal:F4HWE6Proteomes:UP000006548Reactome:R-ATH-5620916
RefSeq:NP_173541.1STRING:3702.AT1G21170.1SUPFAM:SSF74788TAIR:AT1G21170
tair10-symbols:SEC5BUniGene:At.46455UniGene:At.67049UniProt:F4HWE6
Coordinates (TAIR10) chr1:+:7413050..7419411
Molecular Weight (calculated) 122680.00 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.56
Length 1090 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSSDDLDED ELLQMALKEQ SQRDVTYQKP PSANSRKPVT NLVQQPRRQK RAAAPPSKGG AKASRKPSMD EDDESEVELL SISSGDEDEG NDRGRGGGGD
0101: GGGGRGRGGS GKERGRARKE DDRAWDGVEP DCWKRVNEAE LARKVRDMRE SRTAPSVTQN LDRKVSGADK KVVLTSLQSF PRGMECIDPL KLGIIDNKTL
0201: RLITESSESL SKAEKVDNAL REKLVYTSDH FDPKLFISRI HQETSAADLE SGALALKSDL KGRNLQRKQL VKDNFDCFVS CKTTIDDIES KLKRIEDDPD
0301: GSGTTHLFNC MKSVTSRANR AFEPLFERQA QAEKIRSVQG MLQRFRTLFN LPSIIRSSIS KGEYDLAVRE YKKAKSIALP SHVNLLKRVL EEVEKVMQEF
0401: KGTLYRSMED PKIDFTSLEN TVRLLLELEP ESDPVWHYLN VQNHRIHGML EKCTFDHEAR MEILRNQVHE RALSDAKWRQ IQQNGVQLSD DTSSMEDNQV
0501: QVDQPLEESA RREKDALRGR YIKILTAVIV YHLPTFWKTA LSVFTGKFAK SSQVNDTSAS KAEEKAEEAR YSSHSLEEIA GMIRNTISVY EAKVQSTFHD
0601: FDESYILHPY MSDTIKEVSK ACQAFEAKES APHSAVMALR KVKVEITKIY IQRLCSWMRA STEEISKEET WIPVSILERN RSPYSISYLP LAFRSIIVSG
0701: MEQINMMILS LKGEAARSED MFAHIEEILI SVRLAFLNCF LDFAAHLEQI GADLSQRTTK RESWQNGYSN DHQEEQSINA PESVVDPHRQ LLMILSNIGY
0801: CKDELASELY NKYKYTWLQS RRNDEDISDL QDLMMSFSGL GEKVLEHYTF AKANLIRTAA TNYLLDSGIQ WGAAPPVKGI RDAAVELLHT LVAVHAEVFA
0901: GAKPLLDKIL GTLVEGLIDT FLSLLDENRS DDLSSIDANG FCQLMLELEY FETILKPYLT VDATESLKSL QGAVLEKAIE SISETVENNP GGHQRKPTRG
1001: SEDAISDDKQ SSVSPDDLLA LAQQCTSGML QLELEKTRLN SACFIETIPL DPVPPVAKAA YSRTSTDSPS RNYRESQPMG SPVQARPRRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)