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AT3G08960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G26170.1); Has 1304 Blast hits to 1268 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 472; Plants - 189; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5657eggNOG:KOG1993EMBL:CP002686EnsemblPlants:AT3G08960
EnsemblPlants:AT3G08960.1entrez:820048Gene3D:1.25.10.10GeneID:820048
GO:GO:0005622GO:GO:0006886Gramene:AT3G08960.1hmmpanther:PTHR10997
hmmpanther:PTHR10997:SF7InParanoid:F4IYK6InterPro:IPR001494InterPro:IPR011989
InterPro:IPR016024KEGG:ath:AT3G08960OMA:LLLIRACPaxDb:F4IYK6
Pfam:PF03810Pfscan:PS50166PRIDE:F4IYK6PROSITE:PS50166
ProteinModelPortal:F4IYK6Proteomes:UP000006548RefSeq:NP_187508.5SMART:SM00913
SMR:F4IYK6STRING:3702.AT3G08960.1SUPFAM:SSF48371TAIR:AT3G08960
UniGene:At.21981UniGene:At.47584UniGene:At.75579UniProt:F4IYK6
Coordinates (TAIR10) chr3:-:2730405..2736762
Molecular Weight (calculated) 113980.00 Da
IEP (calculated) 5.32
GRAVY (calculated) 0.06
Length 1010 amino acids
Sequence (TAIR10)
(BLAST)
0001: MALSASDLPA MYTLLANSMS GDETVRRPAE AALSLSESRP GFCSCLMEVI ASKDLVSHVD VRLMASVYFK NSINRHWKSR RNSWSMSNEE KSHLRQKLLS
0101: HLREENYQIA EMLAVLISKI ARFDYPREWP DLFSVLAQQL HSADVLASHR IFLILFRTLK ELSTKRLTAD QKTFAEISSQ FFDFSWHLWQ TDVQTILHGF
0201: STMVQSYGSN SAEQHHDELF LTCERWFLCL KIVRQLIISG FLSDANNIQE IQPVKEVSPA LLNAAQSFLP YYSSFQNRDP KFWEFVKKAC VKLMKVLGAI
0301: QSRHPFSFGD KCALPVVVDF CLNKITDPEQ ALLPFEDFFI QCMVMVKSVL ECKEYKPSRT GRVMDDNGDT FEQRKKNASN TVGGIVSSLL PNERIVLLCN
0401: VLVRRYFVLT ASDLEEWYQN PESFHHEQDM IQWTEKLRPC AEALYMVLFE NYSQLLGPIV VSILQEAMNN CPPSVTEITP ALLLKDAAYA ATAYVYYELS
0501: NYLNFRDWFN GALSLELSND HPNRRIIHRK VAMILGHWVS EIKDDTKRAV YCALIKLLQD NDLAVKLAAS RSLCLHVEDA NFSEQSFLDL LPICWDSCFK
0601: MVEVVQEFDS KVQILNLIST LIGHVSEVIP YAQKLVQFFQ KVWEESSGES LLQIQLLVAL RNFVIALGYQ SPICYSILLP ILQKGIDINS PDSLNLLEDS
0701: MALWETTLSY APMMVPQLLA LFPYMVEIIE RSFDHLQVAV SIMDSYIILD GGEFLNMHAS SVAKILDLIV GNVNDKGLLS ILPVIDILVQ CFPVEVPPLI
0801: SSCLQKLVII CLSGGDDRDP SKTAVKVSSA AILARILVMN TTYLAQLTSD SSLSVLLQQA GVPVEDNILL CLIDIWLDKV DHASPMQQKT FGLALSIILT
0901: LRMPQVLDKL DLILSTCTSV ILGENKDLTE EESSGDMSSS RSQGEETPPS KELRKSQIKV SDPIYQMSLE NSTRENLQTC STLHGDAFNS AISRMHPSAL
1001: AQVKQALKLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)