AT3G08960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G26170.1); Has 1304 Blast hits to 1268 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 515; Fungi - 472; Plants - 189; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:2730405..2736762 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113980.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.06 | ||||||||||||||||||||||||||||||||||||
| Length | 1010 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALSASDLPA MYTLLANSMS GDETVRRPAE AALSLSESRP GFCSCLMEVI ASKDLVSHVD VRLMASVYFK NSINRHWKSR RNSWSMSNEE KSHLRQKLLS 0101: HLREENYQIA EMLAVLISKI ARFDYPREWP DLFSVLAQQL HSADVLASHR IFLILFRTLK ELSTKRLTAD QKTFAEISSQ FFDFSWHLWQ TDVQTILHGF 0201: STMVQSYGSN SAEQHHDELF LTCERWFLCL KIVRQLIISG FLSDANNIQE IQPVKEVSPA LLNAAQSFLP YYSSFQNRDP KFWEFVKKAC VKLMKVLGAI 0301: QSRHPFSFGD KCALPVVVDF CLNKITDPEQ ALLPFEDFFI QCMVMVKSVL ECKEYKPSRT GRVMDDNGDT FEQRKKNASN TVGGIVSSLL PNERIVLLCN 0401: VLVRRYFVLT ASDLEEWYQN PESFHHEQDM IQWTEKLRPC AEALYMVLFE NYSQLLGPIV VSILQEAMNN CPPSVTEITP ALLLKDAAYA ATAYVYYELS 0501: NYLNFRDWFN GALSLELSND HPNRRIIHRK VAMILGHWVS EIKDDTKRAV YCALIKLLQD NDLAVKLAAS RSLCLHVEDA NFSEQSFLDL LPICWDSCFK 0601: MVEVVQEFDS KVQILNLIST LIGHVSEVIP YAQKLVQFFQ KVWEESSGES LLQIQLLVAL RNFVIALGYQ SPICYSILLP ILQKGIDINS PDSLNLLEDS 0701: MALWETTLSY APMMVPQLLA LFPYMVEIIE RSFDHLQVAV SIMDSYIILD GGEFLNMHAS SVAKILDLIV GNVNDKGLLS ILPVIDILVQ CFPVEVPPLI 0801: SSCLQKLVII CLSGGDDRDP SKTAVKVSSA AILARILVMN TTYLAQLTSD SSLSVLLQQA GVPVEDNILL CLIDIWLDKV DHASPMQQKT FGLALSIILT 0901: LRMPQVLDKL DLILSTCTSV ILGENKDLTE EESSGDMSSS RSQGEETPPS KELRKSQIKV SDPIYQMSLE NSTRENLQTC STLHGDAFNS AISRMHPSAL 1001: AQVKQALKLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)