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AT3G52640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 17151019
AmiGO : vacuole 15539469
SwissProt : plasma membrane 16381842
TAIR : vacuole 15539469
TAIR : plasma membrane 17151019
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24723404 (2014): Golgi trans-Golgi network
  • PMID:24723404 (2014): plant-type vacuole
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Zn-dependent exopeptidases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zn-dependent exopeptidases superfamily protein; INVOLVED IN: protein processing; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicastrin (InterPro:IPR008710); Has 236 Blast hits to 233 proteins in 88 species: Archae - 0; Bacteria - 4; Metazoa - 152; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:9748eggNOG:ENOG410XT6XeggNOG:KOG2657EMBL:AL353912
EMBL:BT002382EMBL:BT008417EMBL:CP002686EnsemblPlants:AT3G52640
EnsemblPlants:AT3G52640.1entrez:824430ExpressionAtlas:Q8GUM5GeneID:824430
Genevisible:Q8GUM5GO:GO:0007219GO:GO:0016021GO:GO:0016485
hmmpanther:PTHR21092hmmpanther:PTHR21092:SF0HOGENOM:HOG000030067InParanoid:Q8GUM5
InterPro:IPR008710PANTHER:PTHR21092PaxDb:Q8GUM5Pfam:PF05450
Pfam:Q8GUM5PhylomeDB:Q8GUM5PIR:T49017PIR:T49018
PRIDE:Q8GUM5PRO:PR:Q8GUM5ProteinModelPortal:Q8GUM5Proteomes:UP000006548
RefSeq:NP_190832.3SMR:Q8GUM5STRING:3702.AT3G52640.2SUPFAM:SSF53187
TAIR:AT3G52640TMHMM:TMhelixUniGene:At.43576UniProt:Q8GUM5
Coordinates (TAIR10) chr3:-:19515078..19520290
Molecular Weight (calculated) 73011.40 Da
IEP (calculated) 6.45
GRAVY (calculated) 0.08
Length 676 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMGLIRLLS IAFTLVLLSI LPLHLSLADE ITSIESVPDL QKLMYVAVDG FPCVRLLNLS GEIGCSNPGI NKVVAPIIKL KDVKDLVQPH TILVTADEME
101: DFFTRVSTDL SFASKIGGVL VESGSNFQQK LKGFSPDKRF PQAQFSPYEN VEYKWNSAAS SIMWRNYNFP VYLLSESGIS AVHEILSKKK MKHGTYTSDV
201: AEFNMVMETT KAGTHNSEAC LQEGTCLPLG GYSVWSSLPP ISVSSSNNRK PVVLTVASMD TASFFRDKSF GADSPISGLV ALLGAVDALS RVDGISNLKK
301: QLVFLVLTGE TWGYLGSRRF LHELDLHSDA VAGLSNTSIE TVLEIGSVGK GLSGGINTFF AHKTRVSSVT NMTLDALKIA QDSLASKNIK ILSADTANPG
401: IPPSSLMAFM RKNPQTSAVV LEDFDTNFVN KFYHSHLDDL SNINSSSVVA AASVVARTLY ILASDNKDTS NSALGSIHVN ASFVEELLTC LLACEPGLSC
501: NLVKDYISPT NTCPGNYAGV ILGEPSSKPY LGYVGDVSRF LWNFLADKTS VQKGNTTSVC SKGVCSKTDE VCIKAESNKE GTCVVSTTRY VPAYSTRLKY
601: NDGAWTILPQ NSSDSMGMVD PVWTESNWDT LRVHVYTVQH SAYDNAVLVA GITVTTLAYI GILAAKSIIT KALKQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)