AT2G39190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATATH8; FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G71810.1); Has 8602 Blast hits to 8602 proteins in 1792 species: Archae - 122; Bacteria - 4346; Metazoa - 387; Fungi - 450; Plants - 638; Viruses - 14; Other Eukaryotes - 2645 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:16350140..16352680 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41682.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||
| Length | 374 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASVSPSPSC STIPIPLRRT SFAVAELRRL KQRRAIPPVS VGLGHFADVV RNDVDFLKNK IGIGLRWANE AFRVPEVTKS AEELFWLRHL EDHTSQNLKS 101: QSWPQPSYSG LTGVDLFMAD VKALETYAGY FYSLSKMWSR PLPEVYDSQA VADYFNCRPH VVAFRLLEVF SAFTIAAIRL RTSASVKGKS LEASEQIFGM 201: VLKETMLHLG PTFIKVGQSL STRPDIIGTE ISKALSELHD RIPPFPWPEA VKILEGELGG PVESFFSQFS QETVAAASFG QVYRGRTLDG ADVAVKVQRP 301: DLRHAVLRDI YILRLGLGVL RKVAKRENDI RVYADELGMG LAGELDFTLE AANASEFQLT HDFPISGFQK YISI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)