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AT1G21870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15480787 (2004): Golgi Golgi apparatus Golgi membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : golgi nucleotide sugar transporter 5
Curator
Summary (TAIR10)
Encodes a Golgi-localized nucleotide-sugar transporter.
Computational
Description (TAIR10)
golgi nucleotide sugar transporter 5 (GONST5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: EamA-like transporter family protein (TAIR:AT1G77610.1); Has 3294 Blast hits to 3291 proteins in 314 species: Archae - 0; Bacteria - 80; Metazoa - 703; Fungi - 565; Plants - 1531; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink).
Protein Annotations
BioGrid:24028eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC013482
EMBL:AJ551328EMBL:CP002684EMBL:DQ446272EMBL:DQ652850
EnsemblPlants:AT1G21870EnsemblPlants:AT1G21870.1entrez:838789GeneID:838789
Genevisible:Q9SFE9GO:GO:0000139GO:GO:0005794GO:GO:0008643
GO:GO:0015780GO:GO:0016021Gramene:AT1G21870.1hmmpanther:PTHR11132
hmmpanther:PTHR11132:SF127HOGENOM:HOG000242536InParanoid:Q9SFE9InterPro:IPR004853
KEGG:ath:AT1G21870OMA:ISPMNAVPaxDb:Q9SFE9Pfam:PF03151
Pfam:Q9SFE9PhylomeDB:Q9SFE9PRIDE:Q9SFE9PRO:PR:Q9SFE9
ProteinModelPortal:Q9SFE9Proteomes:UP000006548RefSeq:NP_173605.1STRING:3702.AT1G21870.1
SUPFAM:0043518TAIR:AT1G21870tair10-symbols:GONST5TMHMM:TMhelix
UniGene:At.41638UniProt:Q9SFE9
Coordinates (TAIR10) chr1:+:7678208..7679697
Molecular Weight (calculated) 38850.40 Da
IEP (calculated) 9.69
GRAVY (calculated) 0.58
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEGSLWRQW TMFRSLLSIL QWWGFNVTVI IMNKWIFQKL DFKFPLSVSC VHFICSSIGA YIVIKVLKLK PLIVVDPEDR WRRIFPMSFV FCINIVLGNI
101: SLRYIPVSFM QTIKSLTPAT TVVLQWLVWR KYFDWRIWAS LVPIVGGILL TSITELSFNV FGFCAALFGC LATSTKTILA ESLLHGYKFD SINTVYYMAP
201: FATMILGLPA FLLERNGILD WFEAHPSPWS ALIILFNSGV LAFCLNFSIF YVIQSTTAVT FNVAGNLKVA VAVFVSWMIF RNPISPMNAV GCGITLVGCT
301: FYGYVRHMLS QQQPGTPRTP RTPRNKMELI PLVNDKLESK I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)