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AT3G09100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mRNA capping enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT5G01290.1); Has 815 Blast hits to 810 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 317; Fungi - 230; Plants - 80; Viruses - 64; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G09100-MONOMERBioCyc:ARA:GQT-707-MONOMEReggNOG:COG5226eggNOG:KOG2386
EMBL:AY125498EMBL:CP002686EnsemblPlants:AT3G09100EnsemblPlants:AT3G09100.1
entrez:820064ExpressionAtlas:Q8L7W6Gene3D:3.90.190.10GeneID:820064
GO:GO:0004484GO:GO:0004651GO:GO:0004725GO:GO:0005634
GO:GO:0006370GO:GO:0008138Gramene:AT3G09100.1hmmpanther:PTHR10367
hmmpanther:PTHR10367:SF0HOGENOM:HOG000264524InterPro:IPR000340InterPro:IPR000387
InterPro:IPR001339InterPro:IPR016130InterPro:IPR017074InterPro:IPR020422
InterPro:IPR029021KEGG:ath:AT3G09100KO:K13917Pfam:PF00782
Pfam:PF01331Pfscan:PS50056PhylomeDB:Q8L7W6PIRSF:PIRSF036958
PROSITE:PS00383PROSITE:PS50056Proteomes:UP000006548Reactome:R-ATH-72086
Reactome:R-ATH-77075RefSeq:NP_187522.2scanprosite:PS00383SMART:SM00195
SMR:Q8L7W6STRING:3702.AT3G09100.2SUPFAM:SSF52799SUPFAM:SSF56091
TAIR:AT3G09100UniGene:At.47836UniProt:Q8L7W6
Coordinates (TAIR10) chr3:-:2790038..2792913
Molecular Weight (calculated) 54579.60 Da
IEP (calculated) 6.95
GRAVY (calculated) -0.70
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MVATMDLNAS PQPEEDDEPY VRHLEDYSSR DERIESAVEI ARREREERKK RMRYDKPTHN SQPVFRDQYY QNRNTKAYDR YKIPQGWLDC PPSGNEIGFL
101: VPSKVPLNES YNNHVPPGSR YSFKQVIHNQ RIAGRKLGLV IDLTNTTRYY STTDLKKEGI KHVKIACKGR DAVPDNVSVN AFVNEVNQFV LNLKHSKKYI
201: LVHCTHGHNR TGFMIVHYLM RSGPMNVTQA LKIFSDARPP GIYKPDYIDA LYSFYHEIKP ESVICPSTPE WKRSTELDLN GEALPDDEDD DGGPAGPVQG
301: FQEESHQVDV KMSNDDVLGD EIPPDQEEGY RQFFYRMLSL NIGGRGCSQF PGSHPVSLNR ENLQLLRQRY YYATWKADGT RYMMLLTTDG CYIVDRSFRF
401: RRVQMRFPFR HPTEGISDKV HHFTLLDGEM IIDTLPDKQK QERRYLIYDM VAINGQSVVE VGIVIIYLCN Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)