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AT3G27700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 3784 Blast hits to 2558 proteins in 341 species: Archae - 8; Bacteria - 515; Metazoa - 625; Fungi - 291; Plants - 164; Viruses - 7; Other Eukaryotes - 2174 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2TWeggNOG:KOG2135EMBL:AB493634EnsemblPlants:AT3G27700
EnsemblPlants:AT3G27700.1EnsemblPlants:AT3G27700.2entrez:822392ExpressionAtlas:C0SVD1
Gene3D:3.30.70.330GeneID:822392GO:GO:0000166GO:GO:0003676
GO:GO:0046872Gramene:AT3G27700.1Gramene:AT3G27700.2hmmpanther:PTHR14398
hmmpanther:PTHR14398:SF0InterPro:IPR000504InterPro:IPR000571InterPro:IPR012677
iPTMnet:C0SVD1KEGG:ath:AT3G27700KO:K13192ncoils:Coil
OMA:HETQNESPaxDb:C0SVD1Pfam:PF00076Pfam:PF14259
Pfam:Q9LVX1Pfscan:PS50102Pfscan:PS50103PhylomeDB:C0SVD1
PRIDE:C0SVD1PROSITE:PS50102PROSITE:PS50103ProteinModelPortal:C0SVD1
RefSeq:NP_189407.2RefSeq:NP_851008.1SMART:SM00356SMART:SM00360
SMR:C0SVD1STRING:3702.AT3G27700.1SUPFAM:SSF54928TAIR:AT3G27700
UniGene:At.8026UniProt:C0SVD1UniProt:Q9LVX1
Coordinates (TAIR10) chr3:-:10257681..10261330
Molecular Weight (calculated) 99233.60 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.87
Length 908 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSVSSPKQ SVLSPPDCMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS LEQDSSDQAF SRPYRKNYRH YENGNSFSEH EKRSFGTGSG QRVQFDNQRM
101: RSNPMFSRDS GPGRGRGNYG SWAQRDSRFN PVDLSSHMVQ VGSMGQGMFG GRGLAGVSAA QSAPWPPFGM IPGVPNGGLD GFHHLQGSLR PPLNAPLNMG
201: IPRQRCRDFE ERGFCLRGDM CPMEHGMNRI VVDDVQSLSQ FNLPVSVPGA PHLAASSKQV PAQFGGASFM NPKGAHGRTN EGGMAVDGLG YGDAYPSAGG
301: TDFYDPDQPL WNNSTGETSG AISTLNSHGV DENVAPLDDS NQDAAENGCG IRDSRSTSQS VWGRMKGSNS QANSKEKADA VLNSSAVPED QLKEVSVNSS
401: RHGKQNHVGE SVAKVVDSSN ISNDMMNNTR KPTQKAMRTL FVNYVPHESN RRDLILAHFQ KFGKVIDIHI PVNSERAFVQ FSKREEAESA LRAPDAVMGN
501: RFIKLWWANR DSIPDNGLST GSGASMKGRS MTASGAQNQF PIAAASKSNH VSSIAKVPTF QTGGAPSSSE QPKPVVVTTS GPKVTPLQQK KADTLERLKE
601: TLRKKQEMLE QKRNEYRKKL ATLEKQGTVV KREEADEPDA KRVKLDTASD SGAAIASPKT ESSTDKKVPI LKPLSTAKLS TETPSPDSKN FKQRPYSFTT
701: SLNAPMVNRY KLDNRTTTIK VVPPLPTGLA DVAVVKEHFS SYGEVSKVEL EDNASIDSGK DHETQNESRA ACVTFVKRSA AEKAFANAKC WQEHTLQLVW
801: VTRQSNRESN NNNNNSNSLS VSRDNLSSKN KCASVSNDPK PAVEVKTSST EEPENTNVSG DNDSTLDKQE TKESDNDNNK SNHESIEGAS EVIATAGTDE
901: EQSEQIHQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)