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AT5G13020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), ENT (InterPro:IPR005491); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT) domain-containing protein (TAIR:AT2G44440.1); Has 417 Blast hits to 397 proteins in 49 species: Archae - 0; Bacteria - 2; Metazoa - 101; Fungi - 4; Plants - 307; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YF3TeggNOG:KOG4675EMBL:AL353013EMBL:CP002688
EnsemblPlants:AT5G13020EnsemblPlants:AT5G13020.1entrez:831142GeneID:831142
Genevisible:F4K2F0GO:GO:0005634GO:GO:0006952Gramene:AT5G13020.1
hmmpanther:PTHR33432hmmpanther:PTHR33432:SF3HOGENOM:HOG000241095InParanoid:F4K2F0
InterPro:IPR005491InterPro:IPR014002iPTMnet:F4K2F0KEGG:ath:AT5G13020
ncoils:CoilOMA:SHQGRYQPaxDb:F4K2F0Pfam:F4K2F0
Pfam:PF03735Pfscan:PS51138PIR:T49916PRIDE:F4K2F0
PRO:PR:F4K2F0PROSITE:PS51138ProteinModelPortal:F4K2F0Proteomes:UP000006548
RefSeq:NP_196806.2SMART:SM00743SMART:SM01191SMR:F4K2F0
STRING:3702.AT5G13020.1SUPFAM:0053920SUPFAM:SSF158639SUPFAM:SSF63748
TAIR:AT5G13020UniGene:At.32119UniProt:F4K2F0
Coordinates (TAIR10) chr5:-:4129691..4132089
Molecular Weight (calculated) 43655.20 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.87
Length 397 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYRPSDSSG TDDDLPPSHQ GRYQRNARPT GNGRPSVLNS APLSRVHNEM ETQIHLIEQE AYSSILRAFK AQSDAITWEK ESLITELRKE LRVSDEEHRE
101: LLSRVNADEM IRRIREWRKA NSLQSSVPQL VHDAPSPAVS GSRKKQKTSQ SIASLAMGPP SPSLHPSMQP SSSALRRGGP PPGPKTKKPK TSMQYPSTGI
201: AGRPQAGALT NEPGESGSYD PLVGRKVWTK WPDDNQYYEA VITDYNPVEG RHALVYDINS ANETWEWVNL KEISPGDIRW EGEDPGISRK GGHPGQGRGT
301: KTMARGGPAS NAGGRGRGSM RMQQPKTQNG IGKKALGEIE ILHTETLLKE VEKVFGSVNP NPAEVEKAKR VLRDHELALM DAIAKLEEIS DGESGNI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)