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AT4G22140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 1958 Blast hits to 1898 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 1059; Fungi - 271; Plants - 475; Viruses - 0; Other Eukaryotes - 153 (source: NCBI BLink).
Protein Annotations
eggNOG:KOG1886EMBL:AK222203EMBL:AL022140EMBL:AL161556
EMBL:AY142507EMBL:CP002687EnsemblPlants:AT4G22140EnsemblPlants:AT4G22140.1
EnsemblPlants:AT4G22140.2entrez:828303ExpressionAtlas:F4JL28Gene3D:3.30.40.10
GeneID:828303GO:GO:0000785GO:GO:0000976GO:GO:0003682
GO:GO:0005634GO:GO:0005677GO:GO:0006342GO:GO:0006351
GO:GO:0006355GO:GO:0008270GO:GO:0009791GO:GO:0009845
GO:GO:0009908GO:GO:0016568GO:GO:0031507GO:GO:0035064
GO:GO:0035067GO:GO:0048579GO:GO:2000028hmmpanther:PTHR12505
HOGENOM:HOG000264809InParanoid:F4JL28InterPro:IPR001025InterPro:IPR001965
InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787
KEGG:ath:AT4G22140OMA:LLYRCSIPfam:PF00628Pfam:PF01426
Pfscan:PS50016Pfscan:PS51038PIR:C85253PIR:T49121
PRIDE:F4JL28PROSITE:PS01359PROSITE:PS50016PROSITE:PS51038
ProteinModelPortal:F4JL28Proteomes:UP000006548RefSeq:NP_001031695.1RefSeq:NP_193945.2
scanprosite:PS01359SMART:SM00249SMART:SM00439SMR:F4JL28
STRING:3702.AT4G22140.1SUPFAM:SSF57903TAIR:AT4G22140tair10-symbols:EBS
UniGene:At.49737UniProt:F4JL28
Coordinates (TAIR10) chr4:-:11728556..11730230
Molecular Weight (calculated) 26567.60 Da
IEP (calculated) 8.00
GRAVY (calculated) -0.53
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)