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AT1G05860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast hits to 100 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX4DeggNOG:ENOG410Y1DGEMBL:AC009999EMBL:AK117538
EMBL:BT005167EMBL:CP002684EnsemblPlants:AT1G05860EnsemblPlants:AT1G05860.1
entrez:837096GeneID:837096Gramene:AT1G05860.1hmmpanther:PTHR16198
HOGENOM:HOG000077497IntAct:Q9MA40InterPro:IPR025927KEGG:ath:AT1G05860
OMA:RCYRDHYPfam:PF13891PhylomeDB:Q9MA40PIR:D86193
Proteomes:UP000006548RefSeq:NP_172077.1TAIR:AT1G05860UniGene:At.42367
UniProt:Q9MA40
Coordinates (TAIR10) chr1:+:1769061..1770349
Molecular Weight (calculated) 31177.80 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.88
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MASASKQNPS SSKPPRHPSP IIASTPSKSG VLEESQFRNP NNPSTSSNSP ISMAVEDQIL GNSNHLTRPE LLRRRSHNLK QLSRCYRDHY WALMEDLKAQ
101: HRYYSWNYGV SPFKDENYHQ NKRRKVEGQT GDEIEGSGDN DNNNNDGVKA GNCVACGSGC KSKAMALTNY CQLHILMDKK QKLYTSCTYV NKRAQSKAIT
201: CPKPTLASTV PALCNVHFQK AQKDVARALK DAGHNVSSAS RPPPKLHDIV AAFVHHIQAK RKDPRKEGKL KSLVKEELTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)