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AT4G31010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding CRS1 / YhbY (CRM) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT5G54890.1); Has 267 Blast hits to 236 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK4MeggNOG:ENOG410XQZ0EMBL:AL022198EMBL:AL161578
EMBL:AY042864EMBL:AY072146EMBL:AY096489EMBL:CP002687
EnsemblPlants:AT4G31010EnsemblPlants:AT4G31010.1entrez:829228ExpressionAtlas:Q8VYD9
Gene3D:3.30.110.60GeneID:829228Genevisible:Q8VYD9GO:GO:0000373
GO:GO:0003723GO:GO:0005739GO:GO:0006397GO:GO:0009793
GO:GO:0030529GO:GO:0097031GO:GO:0097034hmmpanther:PTHR31846
hmmpanther:PTHR31846:SF9HOGENOM:HOG000242611InParanoid:Q8VYD9InterPro:IPR001890
KEGG:ath:AT4G31010OMA:WTGVCAPPaxDb:Q8VYD9Pfam:PF01985
Pfam:Q8VYD9Pfscan:PS51295PhylomeDB:Q8VYD9PIR:B85363
PRIDE:Q8VYD9PRO:PR:Q8VYD9PROSITE:PS51295ProteinModelPortal:Q8VYD9
Proteomes:UP000006548RefSeq:NP_194830.2SMART:SM01103SMR:Q8VYD9
STRING:3702.AT4G31010.1SUPFAM:SSF75471TAIR:AT4G31010UniGene:At.31782
UniGene:At.71202UniProt:Q8VYD9
Coordinates (TAIR10) chr4:+:15106708..15108446
Molecular Weight (calculated) 46395.70 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.70
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MFLIRLSRHN PSSFTLLTRR LHDQTISSSR LRDLYNFQSP PPLSSSASEN PDFNQKNNNK KKPKPQYRPP SSLEGVKTVH SDLPFDFRFS YTESCSNVRP
101: IGLREPKYSP FGPDRLDREW TGVCAPAVNP KVESVDGVED PKLEEKRRKV REKIQGASLT EAERKFLVEL CQRNKTKRQV NLGRDGLTHN MLNDVYNHWK
201: HAEAVRVKCL GVPTLDMKNV IFHLEDKTFG QVVSKHSGTL VLYRGRNYDP KKRPKIPLML WKPHEPVYPR LIKTTIDGLS IDETKAMRKK GLAVPALTKL
301: AKNGYYGSLV PMVRDAFLVS ELVRIDCLGL ERKDYKKIGA KLRDLVPCIL VTFDKEQVVI WRGKDYKPPK EDDEYSSFIH RESSIDSDVD LSCSRGAQDS
401: PDETT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)