AT5G48990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose oxidase/kelch repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes an F-box protein that interacts with SKP1 and likely to be involved in ubiquitin-mediated protein degradation. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Galactose oxidase/kelch repeat superfamily protein; FUNCTIONS IN: protein binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19862340..19863458 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42413.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.70 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 372 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPEKKRKK NQKSSPNPSL PEDLIVSILA RVSRSYYTNL SVVSKTFRSI LTSPELYKTR TLLGKPETFL YVCLRFPDEA NPRWLILYRK PNQTLTKKKK 101: KKEDSSVHLL APIPILNSPT VEWSSLVAVG SYLYAITADI KDSPCSNVWY LDCRTHTWLD SPRLRLAHIN SDFNGRTYFP GSSEKPDSLN CVEVYNTNTQ 201: TWNPVPPQKR KLKFGNMEGK IYIPPCQENH RKAVALNPKV LTWEAVGLGT NLDRGSFCMI GNIAYCYDPS GKFRWMNCNT AEGDWSRLEG LEGLPKFARY 301: STVKLAEYGG KLVVLWDKYV AASGYKEKMI WCAEISLEKR NSEEIWGKVE WFDAVLTVPK SYKFVCAKSA TV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)