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AT1G51745.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 543 Blast hits to 394 proteins in 123 species: Archae - 0; Bacteria - 201; Metazoa - 137; Fungi - 38; Plants - 92; Viruses - 3; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIPFeggNOG:ENOG410YAAQEMBL:AC025294EMBL:BT002989
EMBL:CP002684EnsemblPlants:AT1G51745EnsemblPlants:AT1G51745.1entrez:841600
ExpressionAtlas:P59278GeneID:841600Genevisible:P59278Gramene:AT1G51745.1
hmmpanther:PTHR33697hmmpanther:PTHR33697:SF1HOGENOM:HOG000130039InParanoid:P59278
InterPro:IPR000313iPTMnet:P59278PaxDb:P59278Pfam:P59278
Pfam:PF00855Pfscan:PS50812PRIDE:P59278PRO:PR:P59278
PROSITE:PS50812ProteinModelPortal:P59278Proteomes:UP000006548RefSeq:NP_564598.2
SUPFAM:SSF63748TAIR:AT1G51745UniGene:At.37764UniProt:P59278
Coordinates (TAIR10) chr1:+:19192055..19194375
Molecular Weight (calculated) 61720.90 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.80
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MESNDDRNLE AINASVGRLV WVRRRNGSWW PGQTLVHDQV PDNSLVGPKV GTPIKLLGRD DVSVDWYILE NSKTVKAFRC GEYDTCIEKA KASSSKKRSG
101: KCTLREDAIN NALKIENEHL AKEDDNLCNL SGEEDSKRCL SGKEDEDSGS SDAEETEDDE LASAPEQLQS SISSQEMNNV GASKVQSKRR RTPNDSEDDG
201: TEGVKRMRGL EDIGKEQAGG IVEHKQDLDL ICAVGLSDSV SNGNTIANGN KVCSPSSLKR NVSECSKRKN RRRQLTKVLE STAMVSVPVT CDQGVSLDCQ
301: GIYDSKVSGM ESVESMKSVS VVINNNSDST GVSCEDAYEN VVGASHNNKA KDSEISSISV SAEDDSSDRL FDVPLTGEEN HSEGFPAACR ISSPRKALVT
401: DLTRRCGRNS HNVFVKNEAS NGSACTSPPA SEPVNCILSG IEKNTSKWQL KGKRNSRQMS KKQEERRNVY GEEANNNSST PHSTLYEVKI EVKASYTKPR
501: VPLVSRMSEL SGKAIVGHPL SVEILEEDYS NGMVMPPVVA KAKSLPKKNE ARSRQQRRQR KRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)