AT1G72410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : COP1-interacting protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
COP1-interacting protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G17360.1); Has 14235 Blast hits to 10132 proteins in 704 species: Archae - 23; Bacteria - 1239; Metazoa - 6391; Fungi - 1592; Plants - 624; Viruses - 26; Other Eukaryotes - 4340 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27251949..27256246 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 130008.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||
| Length | 1163 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRSDTVLDYV VFELSPKHSK CELFVSSNEQ TEKLASGLIQ PFVNHLKVLE AKASPVAQSS IRLEVEKSNT WFTKRTLERF VQFVNSPETL EKVNTYYSEM 0101: LQLEAARTLY SQRSEDSKFG ASDDGAAADA TKKELLKAID LRLEAIKKDL TTSISHASAS GFDPHTVSEL KQFADRFSAH HLDEACSKYI SLWKQRPDLI 0201: DMKYSNQLAG VDNVSLQKDS TRQKQNAVNE SEHQIQQCAT TSTKRNEEEK TDDSLDVTSS TVKTTQHTRR LSVQDRINLF ENKQKENSPS GGSKPVAVTK 0301: STELRRLSSD VSSSEKPILR RSSIVSDMST DLASEKKLES FPEDPSSTSS SLPHTIAQPN FNESVKKDDE VKYELKSDSE KVGDEEASRD RVESSKTVTE 0401: TRLVSGVEAT SYVQSRSVID PNVSSASQNQ TERHVDRLQN VMSDAKSRQR EEGYEHKANN VSQSSAMFPS RHTRSQSAHI EASFKEDVAS QPQSRYSFGR 0501: IKKKEVVPSD EQPVLPQKPQ FNVRDGPDDG EGRQVRANSS RFPPASVDQI QRTRLSKENP GANDELKLKA NELEKLFAEH QLRVPGDQSS SSRRGKSSEN 0601: QVAHKEPSHS IAATEKRLSL GGGSADFSKL MTPLVGDKDK GDALRRNLSD LSLTDDSKGK FYEKYMKKRD AKLREEWSLK KGEKETKLKS MQEALEQSRT 0701: EMKAKLSASS SERKDLLSST RQRAEKFRSF NSRSSMKKYQ SEEDEDISEQ KPRAKDKAAS GQQSVGSISS RSSQARKLQP NRNMSSSITP RSAASVPKPS 0801: GKVSNTSSGR RRSDKSLAQS VPNFSELIKE NTKPSSLAVK TTMRSQVKSS GRTKNIKEDT LLQRPRSLRK SSSGNIDFTE LSTLCSDDMM VSLRVDSDIS 0901: ETLRNEEYDE PEAEPEEVLE NAVREEEEVE ELETLVFEDG NPMLSEAYEK VDHSGEENCS FLPATVPTTL LASLMDSPGE SPLSWNANLQ HSFSYPHEHS 1001: SDVDASVDSP TGSPASWSSR MRKKWGTAQT PVTVAAANNM SQYQSKKDLS KGFKRLLKFG RKSRGAESLM MDWVSVTTSE GDDEVEDRRD FADRSSEDLR 1101: KSRMGSLQNH LSEDGFNESE FPEQASNTEL KDDHQMSGSN FKAQKSFFSL STFRGKGNDS KPR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)