AT1G49890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF566) ; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT3G19570.2); Has 9198 Blast hits to 4153 proteins in 422 species: Archae - 34; Bacteria - 1349; Metazoa - 2630; Fungi - 1436; Plants - 341; Viruses - 197; Other Eukaryotes - 3211 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18470282..18473463 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71537.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.39 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||
| Length | 659 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAAAISTTD PRNPPRDRPQ SLTNNGGQRR PRGKQVPSRY LSPSPSHSVS STTTTTTTTT TTTSSSSSSS SSAILRTSKR YPSPSPLLSR STTNSASNSI 101: KTPSLLPKRS QSVDRRRPSA VSVTVGTEMS AATKMLITST RSLSVSFQGE AFSLPISKKK ETTSTPVSHR KSTPERRRST PVRDQRENSK PVDQQRWPGA 201: SRRGNSESVV PNSLSRSLDC GSDRGKLGSG FVGRSMLHNS MIDESPRVSV NGRLSLDLGG RDEYLDIGDD IQRRPNNGLT SSVSCDFTAS DTDSVSSGST 301: NGVQECGSGV NGEISKSKSL PRNIMASARF WQETNSRLRR LQDPGSPLSS SPGLKTSSIS SKFGLSKRFS SDAVPLSSPR GMASPVRGSA IRSASPSKLW 401: ATTTSSPARA LSSPSRARNG VSDQMNAYNR NNTPSILSFS ADIRRGKIGE DRVMDAHLLR LLYNRDLQWR FVNARADSTV MVQRLNAEKN LWNAWVSISE 501: LRHSVTLKRI KLLLLRQKLK LASILRGQMG FLEEWSLLDR DHSSSLSGAT ESLKASTLRL PIVGKTVVDI QDLKHAVSSA VDVMQAMSSS IFSLTSKVDE 601: MNSVMVETVN VTAKEKVLLE RCQGCLSRVA AMQVTDCSMK THIIQLSRIP ITSSLTPQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)