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AT4G39600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.859
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G48990.1); Has 1438 Blast hits to 1405 proteins in 73 species: Archae - 0; Bacteria - 15; Metazoa - 338; Fungi - 0; Plants - 1061; Viruses - 3; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AL078620EMBL:AL161595
EMBL:CP002687EnsemblPlants:AT4G39600EnsemblPlants:AT4G39600.1entrez:830114
Gene3D:2.130.10.80GeneID:830114Gramene:AT4G39600.1hmmpanther:PTHR24414
hmmpanther:PTHR24414:SF23HOGENOM:HOG000242515InParanoid:Q9SV98InterPro:IPR001810
InterPro:IPR015916KEGG:ath:AT4G39600OMA:GKLMVLWPaxDb:Q9SV98
Pfam:PF00646Pfam:Q9SV98PhylomeDB:Q9SV98PIR:T09376
PRIDE:Q9SV98PRO:PR:Q9SV98ProteinModelPortal:Q9SV98Proteomes:UP000006548
RefSeq:NP_195670.1SMART:SM00256SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT4G39600UniGene:At.65475UniProt:Q9SV98
Coordinates (TAIR10) chr4:-:18389436..18390539
Molecular Weight (calculated) 41214.50 Da
IEP (calculated) 7.87
GRAVY (calculated) -0.20
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MKGKKPSIEI ATSNPSLPED LVVSCLARVS RLYYPTLSLV SKSFRSLIAS PDLYKTRSLL GRTESCLYLC LRYSPEDNPR WFTLCRKPNR RTLSKEKNES
101: SGNLLVPIPI INSPPLEWSS IVAVGSHLYA INGPIEDAPC SNVSFLDCRS HTWLEAPSMR VAHTNSQLDG KMYLAGSSEN VDSLNCIQVF STKTQTWKPV
201: PFQKRIFGVG DLEGKIYTIC RTECGQGVTI KPKDLTCDVV GFCGEKDWSS VCMIGNIVYF YRPNGEFLWI YSGKGESARR NLKGLEGLPK FDDYASVKLV
301: DYGGKLMVLW DTYVPESESK EKMIWCAEIS LQKKCNNEEI WGTVEWFDAV LTVPEDCKFV RAIAATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)