AT3G24860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (TAIR:AT2G44730.1); Has 901 Blast hits to 752 proteins in 148 species: Archae - 0; Bacteria - 32; Metazoa - 105; Fungi - 44; Plants - 531; Viruses - 61; Other Eukaryotes - 128 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9073642..9074574 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35193.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.76 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.99 | ||||||||||||||||||||||||||||||||||||
| Length | 310 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA 101: ASSRSGVERT STQCRHKIEK MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE EDNNNYEEEE EEDERQSKSR 201: SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL 301: QFINNAFDSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)