suba logo
AT1G32610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 506 Blast hits to 500 proteins in 131 species: Archae - 0; Bacteria - 7; Metazoa - 178; Fungi - 141; Plants - 111; Viruses - 9; Other Eukaryotes - 60 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXT3eggNOG:ENOG410YRKUEMBL:AC017118EMBL:AK175515
EMBL:AK176587EMBL:BT010437EMBL:CP002684EnsemblPlants:AT1G32610
EnsemblPlants:AT1G32610.1EnsemblPlants:AT1G32610.2entrez:840156GeneID:840156
Gramene:AT1G32610.1Gramene:AT1G32610.2hmmpanther:PTHR33783hmmpanther:PTHR33783:SF2
HOGENOM:HOG000243607KEGG:ath:AT1G32610OMA:MAQPTHEPhylomeDB:Q9LPK0
PIR:F86451Proteomes:UP000006548RefSeq:NP_001031129.1RefSeq:NP_174539.1
TAIR:AT1G32610UniGene:At.40102UniProt:Q9LPK0
Coordinates (TAIR10) chr1:-:11795892..11796767
Molecular Weight (calculated) 32363.20 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.87
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRTCWYYDQ LGVNKIGKNI KKSPLPQPQG YSMSNNDFTS IVQQLTDSPS RESLPQPLPR NLLKPQQKIR PVGQIQINRP CVPPPVMAQP THEFVARPPM
101: HPLPHGSQPI ISHGDQFGSN TAESSVSVYM RYRQSSLGDS GPNENQMQPS HDNQQQPQVE GQAQSHNHHS PRFNDSARNT PILPTPKFDG PPQQMHNNSL
201: PSPRFNGRGI LPTPTSQYRP QSPTAYRNLL SPRSPSPLLS TGVQYPPPLT PRNYTFSSMD QPGILGPGTI PLPHASPFGV IPISSQRWRG Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)