AT2G20310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RPM1 interacting protein 13 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1. | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RPM1 interacting protein 13 (RIN13); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28690.1); Has 124 Blast hits to 118 proteins in 30 species: Archae - 2; Bacteria - 0; Metazoa - 13; Fungi - 2; Plants - 98; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8761328..8763083 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47938.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.42 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||
| Length | 430 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSGNHVDIV DVSSGEEDVD TRGDVEYTDW LNGVMEPVDD TSDSTDIVEV LSEVRGGVNS QYRKPNSSNQ ALEDDDDCVI LDCDPDKTRE TTSVDDDDDD 101: DVLVVGQKGE IACRDFPHPR HSCAKYAFNS TSHEKYCDMC HCYVCDIRAP CPYWCIAVSS IDHCHANDKE KIWKNQREYF RTGYMPTAPS SKPTPSILRV 201: PKNTLLRKNH VEIRPCSSST RVANPSSVKA RHRIRQPIPH NQGLQSQPAQ SLSTVRDSVI QKDRSSYRFS LRSRVASSAG NGISIRFNNA QVSQSSHHSS 301: STVAPTLNPE TYTQQRNVRD HCTALPGSQS NVFTRHADQN IRGSGNRQFQ TNVDRFAPSK APLTAEDSHT ATVQQQPGIN ENVLETKLSE FEKWLMENPN 401: PTGPVSPLPE PGNQDYASTL SFDFETFLND |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)