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AT3G49660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.672
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP3KeggNOG:KOG0266EMBL:AL132965EMBL:CP002686
EnsemblPlants:AT3G49660EnsemblPlants:AT3G49660.1entrez:824128Gene3D:2.130.10.10
GeneID:824128Genevisible:Q9M2Z2GO:GO:0005634GO:GO:0008168
GO:GO:0010228GO:GO:0042393GO:GO:0048188Gramene:AT3G49660.1
hmmpanther:PTHR22847hmmpanther:PTHR22847:SF461HOGENOM:HOG000091642InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472
KEGG:ath:AT3G49660KO:K14963OMA:YTGHRNEPaxDb:Q9M2Z2
Pfam:PF00400Pfam:Q9M2Z2Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q9M2Z2PIR:T46032PRIDE:Q9M2Z2PRINTS:PR00320
PRO:PR:Q9M2Z2PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294
ProteinModelPortal:Q9M2Z2Proteomes:UP000006548RefSeq:NP_190535.1scanprosite:PS00678
SMART:SM00320SMR:Q9M2Z2STRING:3702.AT3G49660.1SUPFAM:SSF50978
TAIR:AT3G49660UniGene:At.35578UniProt:Q9M2Z2
Coordinates (TAIR10) chr3:+:18413690..18415223
Molecular Weight (calculated) 34822.00 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.19
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEIPATAS FTPYVHSQTL TSHNRAVSSV KFSSDGRLLA SASADKTIRT YTINTINDPI AEPVQEFTGH ENGISDVAFS SDARFIVSAS DDKTLKLWDV
101: ETGSLIKTLI GHTNYAFCVN FNPQSNMIVS GSFDETVRIW DVTTGKCLKV LPAHSDPVTA VDFNRDGSLI VSSSYDGLCR IWDSGTGHCV KTLIDDENPP
201: VSFVRFSPNG KFILVGTLDN TLRLWNISSA KFLKTYTGHV NAQYCISSAF SVTNGKRIVS GSEDNCVHMW ELNSKKLLQK LEGHTETVMN VACHPTENLI
301: ASGSLDKTVR IWTQKKE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)