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AT1G05055.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : general transcription factor II H2
Curator
Summary (TAIR10)
Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD.
Computational
Description (TAIR10)
general transcription factor II H2 (GTF2H2); CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), TFIIH basal transcription factor complex, subunit SSL1 (InterPro:IPR012170), Zinc finger, RING-type (InterPro:IPR001841), TFIIH C1-like, C-terminal (InterPro:IPR004595), von Willebrand factor, type A (InterPro:IPR002035); Has 470 Blast hits to 463 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 160; Plants - 39; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5151eggNOG:KOG2807EMBL:AC005322EMBL:AF499443
EMBL:AK229479EMBL:CP002684EnsemblPlants:AT1G05055EnsemblPlants:AT1G05055.1
entrez:839332GeneID:839332GO:GO:0000439GO:GO:0005675
GO:GO:0006289GO:GO:0006351GO:GO:0006357GO:GO:0008270
Gramene:AT1G05055.1hmmpanther:PTHR12695hmmpanther:PTHR12695:SF2HOGENOM:HOG000159415
InterPro:IPR001841InterPro:IPR002035InterPro:IPR004595InterPro:IPR007198
InterPro:IPR012170KEGG:ath:AT1G05055KO:K03142OMA:IRMGFPH
PANTHER:PTHR12695:SF2PaxDb:Q9ZVN9Pfam:PF04056Pfam:PF07975
Pfscan:PS50089Pfscan:PS50234PhylomeDB:Q9ZVN9PIR:E86184
PIRSF:PIRSF015919PRO:PR:Q9ZVN9PROSITE:PS50089PROSITE:PS50234
ProteinModelPortal:Q9ZVN9Proteomes:UP000006548Reactome:R-ATH-113418Reactome:R-ATH-5696395
Reactome:R-ATH-5696400Reactome:R-ATH-674695Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210Reactome:R-ATH-72086Reactome:R-ATH-73776Reactome:R-ATH-73779
Reactome:R-ATH-75953Reactome:R-ATH-76042Reactome:R-ATH-77075RefSeq:NP_683275.2
SMART:SM00327SMART:SM01047SMR:Q9ZVN9STRING:3702.AT1G05055.1
SUPFAM:SSF53300SUPFAM:SSF57889TAIR:AT1G05055tair10-symbols:ATGTF2H2
tair10-symbols:GTF2H2TIGRfam:TIGR00622TIGRFAMs:TIGR00622UniGene:At.43339
UniProt:Q9ZVN9
Coordinates (TAIR10) chr1:-:1448913..1450852
Molecular Weight (calculated) 46980.60 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.23
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNQRKRSND EREEEDDEDA EGIGEWERAY VDDRSWEELQ EDESGLLRPI DNSAIYHAQY RRRLRMLSAA AAGTRIQKGL IRYLYIVIDF SRAAAEMDFR
101: PSRMAIMAKH VEAFIREFFD QNPLSQIGLV SIKNGVAHTL TDLGGSPETH IKALMGKLEA LGDSSLQNAL ELVHEHLNQV PSYGHREVLI LYSALCTCDP
201: GDIMETIQKC KKSKLRCSVI GLSAEMFICK HLCQETGGLY SVAVDEVHLK DLLLEHAPPP PAIAEFAIAN LIKMGFPQRA AEGSMAICSC HKEVKIGAGY
301: MCPRCKARVC DLPTECTICG LTLVSSPHLA RSYHHLFPIA PFDEVPALSS LNDNRRKLGK SCFGCQQSLI GAGNKPVPCV TCRKCKHYFC LDCDIYIHES
401: LHNCPGCESI HRPKSVSLME E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)