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AT1G60670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF3755)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3755) (TAIR:AT1G10820.2); Has 144 Blast hits to 144 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INWVeggNOG:ENOG4111MBVEMBL:CP002684EnsemblPlants:AT1G60670
EnsemblPlants:AT1G60670.1entrez:842361ExpressionAtlas:A8MRN6GeneID:842361
Gramene:AT1G60670.1hmmpanther:PTHR14000hmmpanther:PTHR14000:SF6HOGENOM:HOG000239279
PaxDb:A8MRN6PhylomeDB:A8MRN6PRIDE:A8MRN6ProteinModelPortal:A8MRN6
Proteomes:UP000006548RefSeq:NP_564760.2SMR:A8MRN6STRING:3702.AT1G60670.2
TAIR:AT1G60670UniGene:At.19209UniGene:At.43808UniProt:A8MRN6
Coordinates (TAIR10) chr1:+:22344099..22346773
Molecular Weight (calculated) 22315.50 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.48
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPMDNYCVP STSTTGLVFS ATSSMNASSG FHLTVNSPTS VTGLKHEASL AVDWSVEEQY ILEKGLSKFK DEPQVTKYVK IAATLPDKSV RDVAMRCKWM
101: TQKRRKGEEH STGTKVSYRK VVDLPPKLNM FSTEPQQNAT YAMNHMCQSA RMPFEGLSDA VMERLRQNAQ AFSQISSNLS VCKHEGDAWD HQPDAASACL
201: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)