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AT1G49590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, U1-C type (InterPro:IPR013085), Zinc finger, C2H2-type matrin (InterPro:IPR000690); Has 448 Blast hits to 444 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 54; Plants - 111; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111SKNeggNOG:KOG0150EMBL:BT010196EMBL:CP002684
EnsemblPlants:AT1G49590EnsemblPlants:AT1G49590.1entrez:841383GeneID:841383
GO:GO:0003690GO:GO:0003725GO:GO:0008270GO:GO:0008380
GO:GO:0009845GO:GO:0015030GO:GO:0080188Gramene:AT1G49590.1
hmmpanther:PTHR13173HOGENOM:HOG000241754InterPro:IPR000690InterPro:IPR003604
InterPro:IPR013085OMA:STMQKESPfam:PF06220Pfscan:PS50171
PROSITE:PS50171Proteomes:UP000006548RefSeq:NP_175382.1SMART:SM00451
STRING:3702.AT1G49590.1TAIR:AT1G49590UniGene:At.28747UniProt:Q7XA66
Coordinates (TAIR10) chr1:+:18354997..18356409
Molecular Weight (calculated) 27053.80 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.97
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MTEYWVSQGN KWCEFCKIWI QNNPTSIRNH DLGKRHRECV DKKLTDMRER SAAKDKELKK NEKLLQQIEA KATRSYQKDI ATAQQVAKAN GAPEDGTSDW
101: MLDSASGYYY NQTNGLHYDS QSGFYYSDSI GHWVTQDEAY AAVKTSSGTK VPLVKKPVSS SGAGPSVGKP PGRLVTASLN PKRAVKGAAS SVDLGNNKRK
201: RQDEKPKKVS AEEKAALKAR EAARKRVEDR EKPLLGLYNR PF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)