AT4G24710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12745752..12748995 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52634.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 475 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEIAEQKPMV EDPIPLPNAS MEVSYQNPIE AATIPVQIAV AEPVATPNPP PCLHENKFLV SVEVCLKPSS TARLEDVQRA VERMLENRSM SYADGLVLIP 101: ADDLFLVDNV QRICICDTEE WVKNNDVLLF WQVKPVVHTF QLIEEGPCED LCADGQPASF NEWILPAKEF DGLWESLIYE SGLKQRLLRY AASALLFTQK 201: GVNPNLVSWN RIILLHGPPG TGKTSLCKAL AQKLSIRCNS RYPHCQLIEV NAHSLFSKWF SESGKLVAKL FQKIQEMVEE DGNLVFVLID EVESLAAARK 301: AALSGSEPSD SIRVVNALLT QMDKLKSAPN VIILTTSNIT TAIDVAFVDR ADIKAYVGPP TLHVRYEILR SCVEELISKG IISSFQGCDG LSIPSFSSLK 401: EKLSESEVHD TNTVPWFCKQ LIEAAKGCEG LSGRSLRKLP FLAHAALADP YSHDPSNFLC TMIETAKREK SEQPE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)