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AT2G42080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G58020.1); Has 1438 Blast hits to 1435 proteins in 312 species: Archae - 0; Bacteria - 313; Metazoa - 345; Fungi - 73; Plants - 359; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AY136439EMBL:BT002128
EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G42080EnsemblPlants:AT2G42080.1
entrez:818808Gene3D:1.10.287.110GeneID:818808GO:GO:0005739
GO:GO:0009644GO:GO:0009742GO:GO:0042538GO:GO:0051510
GO:GO:1903578Gramene:AT2G42080.1HOGENOM:HOG000242302InterPro:IPR001623
KEGG:ath:AT2G42080OMA:GHRWVRNPfam:PF00226Pfscan:PS50076
PhylomeDB:P93739PIR:F84849PROSITE:PS50076Proteomes:UP000006548
RefSeq:NP_181738.1SMART:SM00271SMR:P93739STRING:3702.AT2G42080.1
SUPFAM:SSF46565TAIR:AT2G42080UniGene:At.43572UniProt:P93739
Coordinates (TAIR10) chr2:-:17553409..17555475
Molecular Weight (calculated) 30840.40 Da
IEP (calculated) 9.30
GRAVY (calculated) -1.19
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MNAAIRAAIL RPQSYSSQLK TAFFHSTPVL ERKRRTSWES KANVHKKRFR RMREKQELLR NVNAFAANMF TSWHDEFDDD GPSSRKQTSW FKKQYSKEPK
101: GNQNNKHGPY TWGKRNFDFC EVDEDFDVDY VFRTAFGGSR GFSFSFTHEE DEPRWRHHSS RFSNNSNRSW RSKYRLDEDE EEEDYTSDSS DSESEPNQVS
201: HRQALGLSPS GPLNLKDVKH AYRTCALKWH PDRHQGSTKE AAEAKFKLCS VAYQSLCEKL SVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)