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AT1G78810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 75 Blast hits to 52 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZ87eggNOG:ENOG410YMWREMBL:AY062826EMBL:AY128753
EMBL:CP002684EnsemblPlants:AT1G78810EnsemblPlants:AT1G78810.1entrez:844217
ExpressionAtlas:Q8W461GeneID:844217Gramene:AT1G78810.1hmmpanther:PTHR34546
hmmpanther:PTHR34546:SF3KEGG:ath:AT1G78810OMA:WHQGPPTPhylomeDB:Q8W461
Proteomes:UP000006548RefSeq:NP_178002.2TAIR:AT1G78810UniGene:At.22687
UniProt:Q8W461
Coordinates (TAIR10) chr1:-:29628538..29630510
Molecular Weight (calculated) 54216.70 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.72
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNIYDDESL KQEVIYLHSL WHQGPPTRKP IPSPNFNLIH DPIQRPRPNY IPPSDLQLLS RYGAVTPQII SRNPNNPQNL YNNNKRPRPD SGREWPVNDV
101: PQPPSTGSGW PEYRPCKKTR PISAEEKEKL AANMLQRDIH RTCREFFGRK SGEEDSSVAG GDESEIDEGD EDQSLEKEES SSSKEFQFLS RVFEENVKLK
201: EYYEKNTGNG EFWCLVCGGI GEKSCRKFKS CLALIQHSLT IHKTDLKIQH RALAQVVCNV LGWDVNNPVV SSQKDSQTVV EGASEPPSDS KIPQEKQQVM
301: SVEEHAKAAV LQMQQNASEA LKDIFVKDGT GAADGTEENG DENLSEELEL ISKVFSENVE LKSYYEKNYE GGAFICLVCC AATDKKMLKR FKHCYGVVQH
401: CTKVPKMKIR AHKVFAQFVC ELLGWDFELL PRRVMKGVAS LAISNANENN ENTSSMVEEH MCEDKAGNPQ DNNEAEACVE A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)