AT2G42230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C-CAP/cofactor C-like domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C-CAP/cofactor C-like domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); BEST Arabidopsis thaliana protein match is: Tubulin binding cofactor C domain-containing protein (TAIR:AT3G57890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17593807..17596563 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61718.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.43 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 562 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEELIDQSP PPDPDPIQNS NLIIHPRRVP FEHGLLPIQK LVFTDPIQTL APIKQKLASL ATNHRVGSAA ISDALSISDD HARLVLETLS SVLHCETDPL 101: VLAKPEEVDS VGADLRDLIL FLYIQSYKKL LPRTHKDSAS VADVWPSTSA FDGYLSALSP IQLVRSNSRR FMPSPTDEEA HQLSYLQKHI ANIISLLAEP 201: VEGQGDDSLV LSMESLEHIG FLVHYGDKGF DVPSLSQATP FFANSDPDMP AVPVPASQVN DWLLKDIASA LESISNRISG KENGASNASD QNAAMADSSV 301: ALNKVSSNDR GPCIIEGVSK TSLFKQASDL KGRSVKVANC HDSVIYLLAP LRYATVYGCS DSTIVLGAAG KAVKVEHCER VHVIVATKRI CIANCRECVF 401: FLGVNQRPLI VGDNHKLQVA PYNTFYSHLE EHITEVGIQP TINKWNESLA LGAIDPHDSL SHPTGASDKQ AEPASCVDPD QFTTFLIPNW FAGEAIGSTK 501: DNPFPLPDAY KAVQQTNLKN LEETRQSLRE TPLEENRKRE LTTAFHMYFK DWLYGNQIKS PF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)