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AT5G65450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 17
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G65450-MONOMEREC:3.4.19.12eggNOG:ENOG410XQ92eggNOG:KOG1865
EMBL:AB011479EMBL:AF302667EMBL:CP002688EnsemblPlants:AT5G65450
EnsemblPlants:AT5G65450.1entrez:836670GeneID:836670Genevisible:Q9FKP5
GO:GO:0006511GO:GO:0016579GO:GO:0036459GO:GO:0046872
hmmpanther:PTHR24006hmmpanther:PTHR24006:SF503HOGENOM:HOG000242869InParanoid:Q9FKP5
InterPro:IPR001394InterPro:IPR002893InterPro:IPR018200InterPro:IPR028889
KEGG:ath:AT5G65450KO:K11855MEROPS:C19.A06OMA:HEFLRCA
PaxDb:Q9FKP5Pfam:PF00443Pfam:PF01753Pfam:Q9FKP5
Pfscan:PS50235Pfscan:PS50865PhylomeDB:Q9FKP5PRIDE:Q9FKP5
PRO:PR:Q9FKP5PROSITE:PS00972PROSITE:PS01360PROSITE:PS50235
PROSITE:PS50865ProteinModelPortal:Q9FKP5Proteomes:UP000006548RefSeq:NP_201348.1
scanprosite:PS00972scanprosite:PS01360SMR:Q9FKP5STRING:3702.AT5G65450.1
SUPFAM:SSF144232SUPFAM:SSF54001TAIR:AT5G65450tair10-symbols:UBP17
UniGene:At.16943UniProt:Q9FKP5
Coordinates (TAIR10) chr5:+:26157863..26161096
Molecular Weight (calculated) 82003.30 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.49
Length 731 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLVFLLIRR QWRSASVRRE EVIRLIALAT EESYLAEEVR PATVDYGGDS VSDVYRCAVC LYPTTTRCSQ CKSVRYCSSK CQILHWRRGH KEECRSPDYD
101: EEKEEYVQSD YDAKESNVDF PSRGTAYESS SNVSVDVACD MSTSRPSIHK VQPRSEAVDF TTSLNIKDNL YETRPLSRKK SRNRTDKVES ASNYSKGKTD
201: AKLRKLGNQN SRRSGDSANM SISDQFLSVG FEEEMNALKH ERITSEPSSA SAAMSSSSTL LLPSKANSKP KVSQASSSGL KTSVQKVVQH FRPPQSSKKS
301: QPSSSIDEMS FSYELFVKLY CDRVELQPFG LVNLGNSCYA NAVLQCLAFT RPLISYLIRG LHSKTCRKKS WCFVCEFEHL ILKARGGESP LSPIKILSKL
401: QKIGKHLGPG KEEDAHEFLR CAVDTMQSVF LKEAPAAGPF AEETTLVGLT FGGYLHSKIK CMACLHKSER PELMMDLTVE IDGDIGSLEE ALAQFTAYEV
501: LDGENRYFCG RCKSYQKAKK KLMILEGPNI LTVVLKRFQS DNFGKLSKPI HFPELLDISP YMSDPNHGDH PVYSLYAVVV HLDAMSTLFS GHYVCYIKTL
601: DGDWFKIDDS NVFPVQLETV LLEGAYMLLY ARDSPRPVSK NGGRKSKQRR NLAAIPSRKG NKKQRDGDNN SLLPRVDWSS GSLSSMFSSS DTTSSCSTKD
701: SSGIENLSDY LFGGVEPVWK WDRHNKSQTF D
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)