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AT2G45160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAIRY MERISTEM 1 (HAM1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G60630.1); Has 2292 Blast hits to 2267 proteins in 299 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 2284; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioGrid:4460eggNOG:ENOG410JXRKeggNOG:ENOG41103R4EMBL:BT004053
EMBL:BT020591EMBL:CP002685EnsemblPlants:AT2G45160EnsemblPlants:AT2G45160.1
entrez:819124ExpressionAtlas:Q7XJM8GeneID:819124Genevisible:Q7XJM8
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0010492GO:GO:0030154GO:GO:0048768GO:GO:0051301
Gramene:AT2G45160.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF11HOGENOM:HOG000239326
InParanoid:Q7XJM8InterPro:IPR005202KEGG:ath:AT2G45160OMA:HRWIERS
PaxDb:Q7XJM8Pfam:PF03514Pfam:Q7XJM8Pfscan:PS50985
PhylomeDB:Q7XJM8PIR:B84887PRIDE:Q7XJM8PRO:PR:Q7XJM8
PROSITE:PS50985ProteinModelPortal:Q7XJM8Proteomes:UP000006548RefSeq:NP_182041.1
STRING:3702.AT2G45160.1TAIR:AT2G45160tair10-symbols:ATHAM1tair10-symbols:HAM1
tair10-symbols:LOM1UniGene:At.27046UniGene:At.67081UniGene:At.74179
UniProt:B7ZWR8UniProt:Q7XJM8
Coordinates (TAIR10) chr2:-:18618110..18620032
Molecular Weight (calculated) 70209.40 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.29
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSFERFQG EGVFGLSSSS FYSDSQKIWS NQDKTEAKQE DLGYVVGGFL PEPTSVLDAL RSPSPLASYS STTTTLSSSH GGGGTTVTNT TVTAGDDNNN
101: NKCSQMGLDD LDGVLSASSP GQEQSILRLI MDPGSAFGVF DPGFGFGSGS GPVSAPVSDN SNLLCNFPFQ EITNPAEALI NPSNHCLFYN PPLSPPAKRF
201: NSGSLHQPVF PLSDPDPGHD PVRRQHQFQF PFYHNNQQQQ FPSSSSSTAV AMVPVPSPGM AGDDQSVIIE QLFNAAELIG TTGNNNGDHT VLAQGILARL
301: NHHLNTSSNH KSPFQRAASH IAEALLSLIH NESSPPLITP ENLILRIAAY RSFSETSPFL QFVNFTANQS ILESCNESGF DRIHIIDFDV GYGGQWSSLM
401: QELASGVGGR RRNRASSLKL TVFAPPPSTV SDEFELRFTE ENLKTFAGEV KIPFEIELLS VELLLNPAYW PLSLRSSEKE AIAVNLPVNS VASGYLPLIL
501: RFLKQLSPNI VVCSDRGCDR NDAPFPNAVI HSLQYHTSLL ESLDANQNQD DSSIERFWVQ PSIEKLLMKR HRWIERSPPW RILFTQCGFS PASLSQMAEA
601: QAECLLQRNP VRGFHVEKRQ SSLVMCWQRK ELVTVSAWKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)