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AT1G56020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12970.1); Has 3011 Blast hits to 958 proteins in 192 species: Archae - 0; Bacteria - 193; Metazoa - 479; Fungi - 286; Plants - 158; Viruses - 8; Other Eukaryotes - 1887 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVMWeggNOG:ENOG410Y9HKEMBL:AC002304EMBL:AC009894
EMBL:BT011613EMBL:BT012266EMBL:CP002684EnsemblPlants:AT1G56020
EnsemblPlants:AT1G56020.1entrez:842053GeneID:842053Gramene:AT1G56020.1
hmmpanther:PTHR31722hmmpanther:PTHR31722:SF0HOGENOM:HOG000238814KEGG:ath:AT1G56020
OMA:KAPRCTTPhylomeDB:Q9SGT0PIR:D96601Proteomes:UP000006548
RefSeq:NP_175998.1TAIR:AT1G56020UniGene:At.44821UniProt:Q9SGT0
Coordinates (TAIR10) chr1:+:20952216..20953412
Molecular Weight (calculated) 43136.30 Da
IEP (calculated) 10.38
GRAVY (calculated) -0.68
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MASACVKSAG VSPEKFSSYG WTSPRMSLTR DDNRRSSSVD KQQSDPLPEI QDPVVDFEFC LEDPVTMLSA DELFSDGKLV PLKFSGPKTT TTTTSTTVNT
101: TTTEPRGSPE VLKSCRRLEM EISDLFSPKA PRCTTRWREL LGLKRLVNAK EQEESIKASS SSSSTNPKTS SFKQFLHRGS KSSTAASSPL QKESDISESI
201: SVASSRLSLS SSSSSSHEID DLPRLSLDLD KPSANPFAPS RTHSRNLNQP RIRLAKPRRN HPPSTPSVDG SSSSSACIES RGLTVTADSP RLNASGKIVF
301: HGLERSSSSP GSFTGGPRMK QHHGMPRSYS ANVRITPVLN VPVCSLKSGL FFGQLFSSSS SSSSSSPSPG NKSQLQSNGS KNRINRTRLE PKFEQLEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)